Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g1032 ATGATGCTCTCAGGGGACATACCTCCGAACCAGACAATTTACATCAAAAACCTCAACGAAAAAATTAAAAAAGAAGAGTTGAAGAGATCTCTGTATTGCTTATTTTCTCAATATGGAAGGATTTTGGATGTTGTTGCTCTAAAGACACCTAGGCTTCGAGGACAGGCATGGGTTTGTTTTAGTGAAGTCACTGCTGCCAGCAATGCCGTGCGGCAAATGCAAAACTTCCCATTTTATGACAAACCTATGCGAATTCAATACGCGAAAACAAAATCAGATTGTATTGCTAAAGAAGAGGGAAGTTTTGTTCCAAGGGAAAAGAAAAAGAAACAAGAGGAGAAAGCTGAAAGAAAACGTCGGCCTGAAGATACACCGCAATCTACTGCGCCAAATGGAACACATGGTGCAAGTAATGGTTCTTCAACAGCCTCATCCCGTCAAGGACCTGGTGCCCAAGAAACAGCTCCTCCTAACAATATATTATTCATAGAGAATTTGCCTCATGAAACTACTGGCAGGATGCTGGAAATGCTCTTTGAACAATACCCAGGTTTTAAGGAAGTGCGCTTGATCGAAGCAAAACCGGGTATCGCATTTGTAGATTTTGAAGACGAGGTGCAATCATCTATGGCTATGCAGGCTCTTCATGGCTTCAAAATCACCCCTCAAAATGCCATGATTATAACCTTTGCTAAGAAGTAG 702 0.416 MMLSGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRILDVVALKTPRLRGQAWVCFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAERKRRPEDTPQSTAPNGTHGASNGSSTASSRQGPGAQETAPPNNILFIENLPHETTGRMLEMLFEQYPGFKEVRLIEAKPGIAFVDFEDEVQSSMAMQALHGFKITPQNAMIITFAKK* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g1032 233 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 159 233 IPR000504 GO:0003723
Lan2g1032 233 MobiDBLite consensus disorder prediction 125 154 - -
Lan2g1032 233 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 83 IPR000504 GO:0003723
Lan2g1032 233 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 161 220 IPR000504 GO:0003723
Lan2g1032 233 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 90 IPR000504 GO:0003723
Lan2g1032 233 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 5 233 - -
Lan2g1032 233 MobiDBLite consensus disorder prediction 98 158 - -
Lan2g1032 233 CDD RRM2_U1A_like 157 229 - -
Lan2g1032 233 MobiDBLite consensus disorder prediction 98 124 - -
Lan2g1032 233 CDD RRM1_U1A_like 12 89 - -
Lan2g1032 233 Gene3D - 150 233 IPR012677 -
Lan2g1032 233 SMART rrm1_1 12 86 IPR000504 GO:0003723
Lan2g1032 233 SMART rrm1_1 160 229 IPR000504 GO:0003723
Lan2g1032 233 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A 5 233 - -
Lan2g1032 233 SUPERFAMILY RNA-binding domain, RBD 9 222 IPR035979 GO:0003676
Lan2g1032 233 Gene3D - 5 112 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g1032 Lan-Chr2 21368802 21372161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g1032 4 233 Eukaryotic Initiation Factors Gene Family AT1G71770 21.186 8.24e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g1032 K11094 - gmx:100805822 409.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1032 2 21368802 21372161 Lan2g1032 2 21368802 21372161 ECH
Lan2g1032 2 21368802 21372161 Lan11g0369 11 2668085 2670909 LSH