Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g1012 ATGCAAAGCCAATCCGAGTCACCCAACAAGCCCATCAACTCACTGAGTCAACTCGTTCAAAACATGTTATCCAACAACAATAGCAACATCATGCTTGCAGCCATTGTTTCCTTGCTCCTAGTCATCCTCTTTGTCCTCCTTCTCCACATTTACGCCAAGTTGTTCCTAGCTCCGGCACTACCTCGCCGGCGGCGGCGAACTCTTGCCACCGTTGAACCTTCCCGGTTCCACCACTTCCACTTCATAGAAGCTTCACCTATTTCGAACAAAGGACTTGACTCATCAATAGTTTCGAGGATTCCCATGTTTGTGCATGAAGCAGAATCAGAGGAATTGGAGTGTGTGATTTGTTTGAGTTGTTTTGAGGAAGGTGAGATTGGAAGAAACTTATCAAAATGTGGACACAATTTTCATTTGGAATGCATTGATATGTGGCTAAGTTCACATTGCAATTGTCCAATTTGTAGAGCTCCTATTATAGTTCAAAACAATGATGGTGATGGTGATGACAGTGTGGTTGAGATTGTGATTGAAAGTCCAAGTTATGAGATTAGTGAGAGTAGGAGTGATAATTATGGAAATGGTGGAGTCAATAGTGTTTCACAAACTTCATCATCTTTGTTGGGGTTTTCTTTGAAGAAAATGCTAAGCAAAGTTTTTCAATATTCCAATATAAATGAATTGCATGGTTCACAATGA 699 0.4092 MQSQSESPNKPINSLSQLVQNMLSNNNSNIMLAAIVSLLLVILFVLLLHIYAKLFLAPALPRRRRRTLATVEPSRFHHFHFIEASPISNKGLDSSIVSRIPMFVHEAESEELECVICLSCFEEGEIGRNLSKCGHNFHLECIDMWLSSHCNCPICRAPIIVQNNDGDGDDSVVEIVIESPSYEISESRSDNYGNGGVNSVSQTSSSLLGFSLKKMLSKVFQYSNINELHGSQ* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g1012 232 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 7 224 IPR044675 -
Lan2g1012 232 CDD RING-H2_EL5_like 113 156 - -
Lan2g1012 232 Pfam Ring finger domain 113 156 IPR001841 -
Lan2g1012 232 PANTHER - 7 224 - -
Lan2g1012 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 160 IPR013083 -
Lan2g1012 232 SUPERFAMILY RING/U-box 105 162 - -
Lan2g1012 232 SMART ring_2 114 155 IPR001841 -
Lan2g1012 232 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g1012 Lan-Chr2 21182459 21183440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g1012 27 157 Rapid Response to Elicitors AT3G16720 37.857 6.41e-26 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g1012 - - aprc:113874423 258.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1012 2 21182459 21183440 Lan16g0773 16 13452068 13453243 LSH
Lan2g1012 2 21182459 21183440 Lan9g1207 9 19400842 19401981 LSH
Lan2g1012 2 21182459 21183440 Lan2g1012 2 21182459 21183440 PCT
Lan2g1012 2 21182459 21183440 Lan9g1207 9 19400842 19401981 PCT
Lan16g0773 16 13452068 13453243 Lan2g1012 2 21182459 21183440 PCT
Lan2g1012 2 21182459 21183440 Lan16g0773 16 13452068 13453243 PCT
Lan9g1207 9 19400842 19401981 Lan2g1012 2 21182459 21183440 PCT