Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g1009 ATGGGTTCTTGGGTAAGAGGCAAATGCATCGGTAAGGGTGCGTTTGGCACCGTCGATATTGCGGTTGCTAAATCTAACGGTCAACTATTTGCGGTTAAATCAGTTGATCTTAAAACGGGTCTACCGGGTCAGATAGAGGCGCTGGAAAACGAAATTAAGATTCTACGGGGTATGAATTCGCCTCACGTGATTAAATTCCTCGGCGATGATATCACGTGCGAGGGAACGACGTCGTATCACAATCTTCACTTAGAGTACATGCCAGGTGGCACCGTCGCTGACATGGACCATGCTGACGTGGATGAATTGTTAGTGAGGCGCTACGCTTGGTGTCTGGTTCACGCGCTTCGCGACGTTCACGAGCTTGGCGTCGTGCATTGCGACGTGAAGGGAAGGAACGTGCTCCTCGCCGGTGAAGGCTCCGTTGCGAAGCTTGCTGATTTCGGCTCTGCAGTGGAATTCACCGGCGAGGATCATGTGCTTCCACGTGGAAGTCCTATGTGGATGGCGCCGGAGGTTATTCGCCGGGAGTATCAGGGGCCGGAATCCGACGTGTGGTCTCTAGGATGCACCGTGATTGAGATGGTTACCGGGAAAATGCCGTGGGAGGACGACGGCTTTGAGACACTGAATCGAATTGGATTCTCCGGCGAGTTACCGGAGTTTCCAGCGGAATTATCTGAGCTAGGGCATGATTTTCTCGAGAAATGTCTAAGAAGGGATCCGAAAGAAAGATGGAGCTGTAATCAGCTACTTCAGCACCCATTTTTGGTGATGGATTCTTCAAATAACGTTACGGAATCGTCGCCACGGTGCGTTTTGGACTGGTTTGACTCGGAATTCACCGAGTCAGAAGAAGAAGAGAAGGAATTGGATAGTGAAAATGAAAATTCAGCGAAGGGTAGGATCGGTAAATTAGCAATGGAGGTAAGGGTAAATTGGGAAATAGAGGGATGGGTGGAGGTAAGGGCAATTATGTCATCTGAAGTAGAACCATCAAATAAAATGGAAGAGGAGAAAGAAAAAGGGGCAGATTGGGAAATTGGAAATGTGGCAAGGGTAGAAGAGGAAATGAAGGCATCAAGTGGTTTGGAATTAGGAAAAGTGAAAAATGGAAGGGTAAAACGGGAAAAGCGTAGAAATGGGAGGTTGGTGTGGCGGTGTGAATGTGAGGAGTGTAACCGCAACCGTAAGAAGAGGGTAATAGTTGGCGGTGGTTGTGGTTGGAGGTGTCGGCATAAGTTGGATAGGATAAATGGAATATTCAGCATTTACAACTTGCCTTGTAAATTATTCAAATCATTAATGAAATCATATTTAAATATGCGATGCTTTTCAATTATTCTCCGTTGCTTACTTTTTAATCTAACTGCATGTCACAAAAATGTGGTCTGTAAAAAGAGAGAAAAACATTAA 1416 0.4633 MGSWVRGKCIGKGAFGTVDIAVAKSNGQLFAVKSVDLKTGLPGQIEALENEIKILRGMNSPHVIKFLGDDITCEGTTSYHNLHLEYMPGGTVADMDHADVDELLVRRYAWCLVHALRDVHELGVVHCDVKGRNVLLAGEGSVAKLADFGSAVEFTGEDHVLPRGSPMWMAPEVIRREYQGPESDVWSLGCTVIEMVTGKMPWEDDGFETLNRIGFSGELPEFPAELSELGHDFLEKCLRRDPKERWSCNQLLQHPFLVMDSSNNVTESSPRCVLDWFDSEFTESEEEEKELDSENENSAKGRIGKLAMEVRVNWEIEGWVEVRAIMSSEVEPSNKMEEEKEKGADWEIGNVARVEEEMKASSGLELGKVKNGRVKREKRRNGRLVWRCECEECNRNRKKRVIVGGGCGWRCRHKLDRINGIFSIYNLPCKLFKSLMKSYLNMRCFSIILRCLLFNLTACHKNVVCKKREKH* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g1009 471 Pfam Protein kinase domain 6 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan2g1009 471 SUPERFAMILY Protein kinase-like (PK-like) 2 262 IPR011009 -
Lan2g1009 471 Gene3D Transferase(Phosphotransferase) domain 1 1 317 - -
Lan2g1009 471 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Lan2g1009 471 CDD STKc_MAPKKK 3 257 - -
Lan2g1009 471 SMART serkin_6 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan2g1009 471 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 349 - -
Lan2g1009 471 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 14 3 349 - -
Lan2g1009 471 ProSiteProfiles Protein kinase domain profile. 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g1009 Lan-Chr2 21156297 21157968 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g1009 4 323 MAP Kinase Kinase Kinase AT2G30040 63.158 3.86e-134 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lan2g1009 Pkinase 2.3e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g1009 - - mtr:MTR_5g071560 489.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1009 2 21156297 21157968 Lan2g1009 2 21156297 21157968 ECH
Lan2g1009 2 21156297 21157968 Lan9g1204 9 19368630 19370496 LSH
Lan2g1009 2 21156297 21157968 Lan11g0382 11 2782180 2783859 LSH
Lan2g1009 2 21156297 21157968 Lan2g1009 2 21156297 21157968 PCT
Lan2g1009 2 21156297 21157968 Lan11g0382 11 2782180 2783859 PCT
Lan2g1009 2 21156297 21157968 Lan9g1204 9 19368630 19370496 PCT
Lan9g1204 9 19368630 19370496 Lan2g1009 2 21156297 21157968 PCT
Lan11g0382 11 2782180 2783859 Lan2g1009 2 21156297 21157968 PCT