Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g1008 ATGTCGTGCTCCGTCGCGGTTTCAAGTTCTCCGGTGTTCTCACCTTCTTCTTCTCTTTTTTGTACAAAGCCTTCTATTTTATCTTCTTCTCCAGATTCACATACCCTTTCTCTTTCTCATCTCAAACCTTCTTCTTCTGGAACGGCGTCGTGTTGTTCTTCTCCTTCTAATTCTACTTCTTCGCCTTCTTCTCCTTTTCGGCTTCGTCTTTCTAAGCCTCCGGTTATATCCTCTACGTCTCCGAACGGAGCTGTTTTGAAGAGGAAGAGGCCGGCCAGGCTTGATATACCGGTTTCTTCTCTCACATTTGGGGTTCCGGCGACGCCGTCTGCGGTGGCTAGGGATGTGGTAGAGGCTGAAGGAGATGGGTTTTCTGTTTATTGTAAGAGAGGAAGGAGGGAGTATATGGAGGATCGTTATTCTGCTGCTGATAATCTACGTGGTGAATCCAAAATGGCTTTTTTCGGTGTATTTGATGGACATGGAGGTGCCAAAGCTGCAGATTTTGCTGCGAAGAACTTAGAAAAGAATGTCTTAGATGAAGTGATTAGTAGTGATCAAGAAGATATCGAGGAGGCGGTGAAGCGTGGTTACCTCAACACTGATTCTGATTTCTTAAAAGAGGATCTCACTGGTGGTTCATGCTGTGTGACAGCACTGATTAGAAATGGTAACCTTGTGGTGTCCAACGCTGGTGATTGTCGTGCTGTCATAAGCCGAAGCGGTGTTGCAGAGGCCCTAACATCTGATCATCGACCTTCAAGGGAAGATGAAAAGGAAAGAATTGAGACTCTGGGTGGCTATGTTGATTTATGCCGTGGTGTTTGGAGGATCCAGGGATCTCTTGCTGTGTCTAGAGGAATCGGAGATCGCCACATGAAACAATGGGTGACAGCAGAACCTGAGACCAAAGTTCTCAGAATTGAACCTGAACATGACTTGTTAATCTTAGCTTCAGATGGATTATGGGATAAGGTTAGTAATCAGGAAGCAGTAGATATCGCTCGTTCTTTTTTCGCCGGGAACAATAAACCACAACCATTGCTGGCTTGTAAAAAGCTTGTAGATTTGTCAGTTTCGCGCGGCTCCATGGATGATACAAGTGTTATGGTAATCAAGTTGGAGCAATATATTTAG 1137 0.4503 MSCSVAVSSSPVFSPSSSLFCTKPSILSSSPDSHTLSLSHLKPSSSGTASCCSSPSNSTSSPSSPFRLRLSKPPVISSTSPNGAVLKRKRPARLDIPVSSLTFGVPATPSAVARDVVEAEGDGFSVYCKRGRREYMEDRYSAADNLRGESKMAFFGVFDGHGGAKAADFAAKNLEKNVLDEVISSDQEDIEEAVKRGYLNTDSDFLKEDLTGGSCCVTALIRNGNLVVSNAGDCRAVISRSGVAEALTSDHRPSREDEKERIETLGGYVDLCRGVWRIQGSLAVSRGIGDRHMKQWVTAEPETKVLRIEPEHDLLILASDGLWDKVSNQEAVDIARSFFAGNNKPQPLLACKKLVDLSVSRGSMDDTSVMVIKLEQYI* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g1008 378 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN-RELATED 3 377 - -
Lan2g1008 378 SMART PP2C_4 116 372 IPR001932 -
Lan2g1008 378 CDD PP2Cc 123 374 IPR001932 -
Lan2g1008 378 ProSitePatterns PPM-type phosphatase domain signature. 154 162 IPR000222 GO:0043169
Lan2g1008 378 Gene3D - 123 377 IPR036457 -
Lan2g1008 378 Pfam Protein phosphatase 2C 124 366 IPR001932 -
Lan2g1008 378 MobiDBLite consensus disorder prediction 28 88 - -
Lan2g1008 378 SUPERFAMILY PP2C-like 124 375 IPR036457 -
Lan2g1008 378 MobiDBLite consensus disorder prediction 28 84 - -
Lan2g1008 378 ProSiteProfiles PPM-type phosphatase domain profile. 123 374 IPR001932 -
Lan2g1008 378 PANTHER PROTEIN PHOSPHATASE 2C 3 377 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g1008 Lan-Chr2 21143834 21146069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g1008 1 378 PP2C-type Phosphatase Gene Family AT2G30020 64.000 1.98e-167 472
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g1008 K17506 - gmx:100797934 595.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1008 2 21143834 21146069 Lan2g1008 2 21143834 21146069 ECH
Lan2g1008 2 21143834 21146069 Lan9g1203 9 19359043 19361324 LSH
Lan2g1008 2 21143834 21146069 Lan11g0383 11 2792905 2795104 LSH
Lan2g1008 2 21143834 21146069 Lan2g1008 2 21143834 21146069 PCT
Lan2g1008 2 21143834 21146069 Lan11g0383 11 2792905 2795104 PCT
Lan2g1008 2 21143834 21146069 Lan9g1203 9 19359043 19361324 PCT
Lan9g1203 9 19359043 19361324 Lan2g1008 2 21143834 21146069 PCT
Lan11g0383 11 2792905 2795104 Lan2g1008 2 21143834 21146069 PCT