Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g1000 ATGAATCCATTGACACTGGTGAAACGAATTCAGAACATTAACTCAAAAGAAGCAGCACTTGGCATCGGCGAAGAAGCTTCATGGCACTCCAAATACAAAGATTCCGCTTACATTTTCGTCGGCGGCATTCCCTTCGATCTCACCGAAGGTGATCTCATCGCCGTTTTCGCTCAATATGGTGAAGTCGTCGATGTTAATCTCGTCAGAGATAAAGGTACCGGAAAATCTAAGGGTTTTGCATTCATTGCATATGAAGATCAAAGAAGCACGACTCTCGCTGTTGATAATCTGAATGGAGCACAGATTTTAGGGAGAATTATTAGGGTTGATCATGTGGATAAGTATAAGAAGAAGGAAGAGGAGGATGAAGAGACGGAACGCCAGAAAAGGGAGGCTCGTGGTGTTTGTCGAGCTTTCCAAAGAGGCGAATGTACTCGTGGAGCTGGCTGCAAGTTTTCTCATGATGAACAAAGAGCTGCAAACACTGGTTGGGGTCAGGAGGATAACAGTTCAAAATGGGGTAATGACAAATTTGAAGGTCCCAAAAGAGAGGGAAGACCTGGCAACCATTCAAATCGTATTCCAGAAACTAGAGACAAAGATTTGCGCTCCAGAGCCCATGACAATGAGAGGGGATTAGACAGCCAACCCAAGCGAAGTGATAGGAGAGAGATGTTGCGGAGGCATGATGATGATGATATATTTGAGGGTAGAGAAAATAATACTATAAGGGAAGAAAAAAAATCAAGAAGGCACGAAGATGATGAATTTGAACGCAGGTCAAGAGAAGATCAACATAGGAGAGAAGAAAAAAGGTCAAGAAGGAATGATTATGATGATATGGAACCGGACCAAAGAGATCATCACAGGAGGGAAGACAAGAGTTCAAGAAAGCCAGATGATGTCGAGTTTGAACCTAAGTCTAGAGATTCTGATACAAGGGAGGATAAAAGACCCAGGAGGCAGGATGATGATGATTTTGGACATAGATCAAGAGAAGCTCACATTAACCGGGAAGAAAGGAGATCAAGAAAGGACAATGAAGATGAATCTGTGCCAAGATCAAAAGAAGATTATGATAGGAAGCAAGATAGCAGATCATATAGAACTTATCAATCACAGTCAAAAGTAAGATACGATGATGTGAGAGAAGAGAAGAGATCAAGAAGGTAA 1173 0.4211 MNPLTLVKRIQNINSKEAALGIGEEASWHSKYKDSAYIFVGGIPFDLTEGDLIAVFAQYGEVVDVNLVRDKGTGKSKGFAFIAYEDQRSTTLAVDNLNGAQILGRIIRVDHVDKYKKKEEEDEETERQKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGQEDNSSKWGNDKFEGPKREGRPGNHSNRIPETRDKDLRSRAHDNERGLDSQPKRSDRREMLRRHDDDDIFEGRENNTIREEKKSRRHEDDEFERRSREDQHRREEKRSRRNDYDDMEPDQRDHHRREDKSSRKPDDVEFEPKSRDSDTREDKRPRRQDDDDFGHRSREAHINREERRSRKDNEDESVPRSKEDYDRKQDSRSYRTYQSQSKVRYDDVREEKRSRR* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g1000 390 ProSiteProfiles Zinc finger C3H1-type profile. 130 157 IPR000571 GO:0046872
Lan2g1000 390 SMART rrm1_1 37 110 IPR000504 GO:0003723
Lan2g1000 390 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 1 324 - -
Lan2g1000 390 Gene3D - 9 127 IPR012677 -
Lan2g1000 390 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 135 155 IPR000571 GO:0046872
Lan2g1000 390 MobiDBLite consensus disorder prediction 161 390 - -
Lan2g1000 390 Coils Coil 115 135 - -
Lan2g1000 390 SUPERFAMILY CCCH zinc finger 133 155 IPR036855 GO:0046872
Lan2g1000 390 SMART c3hfinal6 132 156 IPR000571 GO:0046872
Lan2g1000 390 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 1 324 - -
Lan2g1000 390 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Lan2g1000 390 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 107 IPR000504 GO:0003723
Lan2g1000 390 MobiDBLite consensus disorder prediction 172 367 - -
Lan2g1000 390 MobiDBLite consensus disorder prediction 376 390 - -
Lan2g1000 390 SUPERFAMILY RNA-binding domain, RBD 28 116 IPR035979 GO:0003676
Lan2g1000 390 CDD RRM_ist3_like 27 113 IPR045844 GO:0000398|GO:0003723
Lan2g1000 390 Gene3D - 128 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g1000 Lan-Chr2 21030085 21033217 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g1000 38 109 Eukaryotic Initiation Factors Gene Family AT3G16380 36.111 2.13e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g1000 K13107 - gmx:100792988 499.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1000 2 21030085 21033217 Lan2g1000 2 21030085 21033217 ECH