Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0987 ATGAAGACAACACCAAGCTACAGTTTGCATCAGTCTAGCAGAAGAAAACAGGATGCTGATCTCTATGATTGTGGTGTGGACAATCCTAAGACTCATCATGTCCTGAAATCTTTCAAGTTTGCTGTCAAGAAATGTGTAGCAGTTTTTACATCGATTCTCTCTGGCAGAAGAAAAATAGCCTCAAAAGGTATTGGAAGTTATGACAGAAAGGATTTTTCAAAAGTCAGAGGGGTATCATCTTTAATTGATTCACCATCTGAAAGTACCATCAAAAGTTCATCATTACGGAAGTTCACATCTTCCTATGCATCAACTAGAACTGCGAGTGAACAGCTTAGAATTGGCAACTTTTCCTTTGATGAAATTTACAAGTCAACAGCAAAATTCTCTCCAGAAAATATTATTGGCGAAGGTGGATTTGGAACAGTGTATAAGGGAAAGCTTAATGATGGAACTCTTGTGGCCGCAAAGCGTGCCAAGAAGAATGTACTAAACACACACTTGTCTGAGTTCAAGAATGAAGTATACACCTTATCAAAAATTGAGCATCTGAATCTTGTGAGGTTATATGGATATGTGGAGCATGAAGAGGAGAAGATCGTTGTTGTTGAATATGTTAGTAATGGAACACTTCGACAACATCTAGATGGTACTAGGGGAGATGGACTAAAAATTGGTGAGCGTCTAGACATAGCAATTGATGTAGCACATGCAATCACCTACCTTCATATGTACACAGATAATCCAGTTATCCATAGAGACATCAAAGCATCAAACATCCTAATCACTCAGAACCTAAGGGCCAAAGTGGCAGACTTTGGTTTTGCAAGGTTGTCTGATGACCCTGGTGCAACCCATATTTCAACTCAAGTTAAAGGAACAGCTGGCTACGTGGATCCCGAGTACATGACAACATATCAACTCACTGACAAGAGTGATGTTTATTCTTTTGGTGTATTGCTAGTTGAAATCGTCACAGGAAGACATCCAATAGAATCAGATAGAGCCATCAGTGATAGAGTTACAATCAGATGGGCAATGCGGATGCTGAAAAAAGGGGAACCTGTGATAGCCATGGACCCGAGATTGCGAAGAAGTCCAGCCTCCAACAAGGCAGCGGAGAAAGTTCTCAAGCTAGCTTTCCAATGCCTTGCACCTACAAAAGAATCAAGGCCATCCATGAAGAGTTGTGCAGAAGTTCTATGGGCCATCCGTAAAGCTTTTAAAGATCAAACCCTTTCACATGATCCTACCCTTCCTTCTCACCATTCTGCATTTGTTCCTCAAAGAGAAAAGAGCAACGAGGGTTATAAATTTATCTCAACACCTAGTCAAATTGTTGCATAA 1347 0.4039 MKTTPSYSLHQSSRRKQDADLYDCGVDNPKTHHVLKSFKFAVKKCVAVFTSILSGRRKIASKGIGSYDRKDFSKVRGVSSLIDSPSESTIKSSSLRKFTSSYASTRTASEQLRIGNFSFDEIYKSTAKFSPENIIGEGGFGTVYKGKLNDGTLVAAKRAKKNVLNTHLSEFKNEVYTLSKIEHLNLVRLYGYVEHEEEKIVVVEYVSNGTLRQHLDGTRGDGLKIGERLDIAIDVAHAITYLHMYTDNPVIHRDIKASNILITQNLRAKVADFGFARLSDDPGATHISTQVKGTAGYVDPEYMTTYQLTDKSDVYSFGVLLVEIVTGRHPIESDRAISDRVTIRWAMRMLKKGEPVIAMDPRLRRSPASNKAAEKVLKLAFQCLAPTKESRPSMKSCAEVLWAIRKAFKDQTLSHDPTLPSHHSAFVPQREKSNEGYKFISTPSQIVA* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0987 448 SMART serkin_6 129 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan2g0987 448 Gene3D Phosphorylase Kinase; domain 1 88 205 - -
Lan2g0987 448 SUPERFAMILY Protein kinase-like (PK-like) 110 404 IPR011009 -
Lan2g0987 448 PANTHER RECEPTOR-LIKE PROTEIN 55 19 422 - -
Lan2g0987 448 CDD STKc_IRAK 135 401 - -
Lan2g0987 448 PANTHER CALMODULIN-BINDING RECEPTOR-LIKE CYTOPLASMIC KINASE 1 19 422 - -
Lan2g0987 448 Gene3D Transferase(Phosphotransferase) domain 1 206 421 - -
Lan2g0987 448 ProSiteProfiles Protein kinase domain profile. 129 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan2g0987 448 Pfam Protein tyrosine and serine/threonine kinase 133 401 IPR001245 GO:0004672|GO:0006468
Lan2g0987 448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 250 262 IPR008271 GO:0004672|GO:0006468
Lan2g0987 448 ProSitePatterns Protein kinases ATP-binding region signature. 135 161 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0987 Lan-Chr2 20946012 20951048 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0987 117 394 Receptor kinase-like Gene Family AT1G79620 43.060 2.09e-67 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Lan2g0987 PK_Tyr_Ser-Thr 3.1e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0987 - - gmx:100811511 620.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g0987 2 20946012 20951048 Lan2g0987 2 20946012 20951048 ECH
Lan2g0987 2 20946012 20951048 Lan9g1444 9 21281302 21285867 LSH
Lan2g0987 2 20946012 20951048 Lan4g0918 4 11198801 11203895 PCT
Lan2g0987 2 20946012 20951048 Lan9g1444 9 21281302 21285867 PCT