Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0979 ATGGGCTTAGAATTAACAGAGGCCCATAGCAAAAGTTCTTCTTCTTCTTCTTATTCTTGGTTTTCCAAAACCCTAATCGCCCTCACACTCTCACACACATACACAGAATTTCAACAGAGCAAAAGCATGAAGACGATTCTGTCTTCAGAGACAATGAACATCCCCGACGGTGTCACCATCAAGGTGCACGCCAAGGTCATCGAGGTTGAGGGTCCACGTGGCAAGCTTGTTCGTGATTTCAAGCATTTGAACCTTGATTTTGACCTAATCACCGATGAAAATGGAAAGAAGAAATTGAAGATCGATGCGTGGTTCGGTTCCAGGAAAACCTCCGCCGCTATCCGCACCGCCCTCAGCCACGTTGAGAATCTCATCACCGGCGTCACCAAGGGTTACCGTTACAAAATGAGATTCGTCTATGCTCACTTTCCCATCAACGCTAGCATTGGCAATGATAACAAGTCTATTGAGATTCGAAACTTTCTCGGCGAAAAGAAGGTGAGGAAAGTGGACATGCTTGATGGAGTTAATATTATTCGATCTGAGAAGGTCAAGGATGAGTTGGTTTTGGATGGAAATGACATTGAGCTTGTTTCTCGCTCTTGTGCCCTCATTAACCAGAAATGCCATGTTAAAAACAAAGATATCAGGAAGTTCCTTGACGGTATCTATGTTAGCGAGAAGGGGACAATACTCGAAGAGTAG 705 0.444 MGLELTEAHSKSSSSSSYSWFSKTLIALTLSHTYTEFQQSKSMKTILSSETMNIPDGVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFDLITDENGKKKLKIDAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASIGNDNKSIEIRNFLGEKKVRKVDMLDGVNIIRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLDGIYVSEKGTILEE* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0979 234 PANTHER 60S RIBOSOMAL PROTEIN L9-1 43 234 - -
Lan2g0979 234 ProSitePatterns Ribosomal protein L6 signature 2. 207 228 IPR002359 GO:0003735|GO:0005840|GO:0006412
Lan2g0979 234 Gene3D - 43 131 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lan2g0979 234 PANTHER 60S/50S RIBOSOMAL PROTEIN L6/L9 43 234 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lan2g0979 234 Gene3D - 132 234 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lan2g0979 234 SUPERFAMILY Ribosomal protein L6 132 228 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lan2g0979 234 Pfam Ribosomal protein L6 143 222 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lan2g0979 234 Pfam Ribosomal protein L6 54 131 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lan2g0979 234 SUPERFAMILY Ribosomal protein L6 43 131 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0979 Lan-Chr2 20840052 20841913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0979 43 234 Cytoplasmic Ribosomal Protein Gene Family AT1G33140 88.083 1.71e-124 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0979 K02940 - gmx:100306058 370.163