Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0954 ATGGTTGGTGCACCTTCTTTCAAGCCATTATTCTTCATCACCACCATTCTCATCATTCTCCCTATCATCATTGCAATAACCAGTGATAATGATGATACTAGAGAAACCCATAATCAAATTCCTAAACCTAATCATTATAATCATGATGATGGTGATGATAATGGTGGTATTGCCACCACAGCACCTACGGTATCAAAGCATTTTGATCATGATCATCAAGGAAAGAAATCATCAGAACCATTGAAACCAAGCACAGCAATTGTTGTTTGTGTTTTAACAACTGTTTGTTCCATTACGTTTATGATTCTTCTTTATATTAAACATTGCATTGATTTTAACAATGCATCTTCTAGTTTGAACAACCCTAATAATAATTCATCTGAGGAAAGAAAGAACTCTGGTGTTGAACGTTCAGTGGTTGAATCATTACCCATTTTCAGATTCGGTTCTCTCACAGGTCACAAGGAAGGGTTGGAATGTGTTATTTGTCTCAAGAAGCTCGAGGATCACGAGTTTCTTCGACTTCTACCAAAATGCGACCATGCATTTCACGTTGAATGTGTTGACATGTGGCTCAACGCTCATTCAACTTGTCCTCTTTGTAGGGACAAGGTTGACCTAGAAGATGTTGCTGTCGTTGACCAACAACACCTTCCATCACCATCATTGATACATAACCAAAGCAATAATCACAACGAAGATTTTGATATTAACAACACAGTGCAACCGCAGAATCTGAGTCATGGAATCAACGATGGATTTATAGAAATAAATTTAGATCAGAAGGAAGAGACATCATCAAATAGAAGATCATTAGATGATAGTGCAATGAGAAGAATAAAGGGTAATAGAGAAGATATGACATTGGTTACACAAGGAAACGAGAGAGAAAAGAAAAAAGAGGAGGAACATAGGTTAGAGCATCGTATAATTGTATCTAATACTACAAAATCATCATCACCATATGGTAGTGTTCCCCAAAAACGATGGAGCAATGTTGAACAATGTGATTTGTTGTACTTAACTTCCGATATGATAATAAGTGAAAGTAGTGCAACAGCAACATCATTATCTCAGCAGCAACAACATCGAAATAAGAGGATGACATTGTCATGTAAAACACATGGAGGAGGAAGCATGCGAAACCAGAATGTTGAAGATGAGATGGAGAAAGGTAGGGTGAATATGAATATGAGGAGTGTGTCTGAGACGACGGGGATGAATAGGAATAGAGGGAGGGAAGGAGAGGAGGAACGGCACGAGGGTGTGGTTAAGAGGTGGTTGGCTTGGATTTCAAAAACACACTCGCCGTAA 1314 0.3836 MVGAPSFKPLFFITTILIILPIIIAITSDNDDTRETHNQIPKPNHYNHDDGDDNGGIATTAPTVSKHFDHDHQGKKSSEPLKPSTAIVVCVLTTVCSITFMILLYIKHCIDFNNASSSLNNPNNNSSEERKNSGVERSVVESLPIFRFGSLTGHKEGLECVICLKKLEDHEFLRLLPKCDHAFHVECVDMWLNAHSTCPLCRDKVDLEDVAVVDQQHLPSPSLIHNQSNNHNEDFDINNTVQPQNLSHGINDGFIEINLDQKEETSSNRRSLDDSAMRRIKGNREDMTLVTQGNEREKKKEEEHRLEHRIIVSNTTKSSSPYGSVPQKRWSNVEQCDLLYLTSDMIISESSATATSLSQQQQHRNKRMTLSCKTHGGGSMRNQNVEDEMEKGRVNMNMRSVSETTGMNRNRGREGEEERHEGVVKRWLAWISKTHSP* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0954 437 CDD RING-H2_EL5_like 159 202 - -
Lan2g0954 437 MobiDBLite consensus disorder prediction 32 80 - -
Lan2g0954 437 ProSiteProfiles Zinc finger RING-type profile. 160 202 IPR001841 -
Lan2g0954 437 Pfam Ring finger domain 159 202 IPR001841 -
Lan2g0954 437 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 210 IPR013083 -
Lan2g0954 437 SUPERFAMILY RING/U-box 154 207 - -
Lan2g0954 437 SMART ring_2 160 201 IPR001841 -
Lan2g0954 437 MobiDBLite consensus disorder prediction 359 383 - -
Lan2g0954 437 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 65 434 - -
Lan2g0954 437 PANTHER RING-H2 FINGER PROTEIN ATL43 65 434 - -
Lan2g0954 437 MobiDBLite consensus disorder prediction 32 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0954 Lan-Chr2 20510173 20511782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0954 81 430 C3H Transcription Factor Family AT5G05810 36.856 1.66e-61 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0954 K19041 - lang:109360354 474.937