Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0953 ATGCTTCCTCCTATTGGGAAATTCTATGGGTTAGAAAAGTGGGTAGAAGATGATAATGATGAATCATCAGGAGTAGGAGAAGGGTATGTTAATCCAGAACCATCTCGTTCGTTGATCAAAGCAATAGAAATGAACGATAGGAGATCAAAATCTGAAAGGAAATCAACGGAAGCATGCAGGAGTCACAGGGATGCTGAGAGGAGACGCAGGCAGAGAATCAATGACCACCTCACCACCTTACGTTCTCTTCTTCCTAACACCGTCAAGTCTGATAAGGCGTCGTTATTAGCGGAAGTGGTTCAGTACGTGAAGCGGTTGAGGAAACAGGCTGATGACGTGGCACTCAGTGAACCCGGTTCGGTTTGTTCCGGTTCGGTTTTTCCTGGAGTGTACGATGAGGCGAGGGTGAGTTATTGCGACGGGGAACCAAACCGGATGAAGGTAACAATGTGTTGCGAGGACCGACCCGGTTTGAACCGGGATTTGACTCAGGCGATTCGGTCGGTTCGGGCGAAGACGGTTCATGCGGAGATGATGACGATTGGGGGCCGGACCAAGAATGTTGTGGTGATTCAATGGGAAGCGCAGGAGGAGAATGAGGTTGGGGCTTTAGAACGGGCTTTAAAAGCGGTGATAGAGAATCGGGCTTTGGTGGAACCTTTGATGGGCCGAGTTGTGGTGGGTCAAAAACGGACTCGAGATAGTTATGGTTGGCCTCTGGAGGTTGACTATGCCTTCTTATTGGGGACCACCCATAACTCGGGTGAGGATATCTCAACTCAATACAAATAA 792 0.4899 MLPPIGKFYGLEKWVEDDNDESSGVGEGYVNPEPSRSLIKAIEMNDRRSKSERKSTEACRSHRDAERRRRQRINDHLTTLRSLLPNTVKSDKASLLAEVVQYVKRLRKQADDVALSEPGSVCSGSVFPGVYDEARVSYCDGEPNRMKVTMCCEDRPGLNRDLTQAIRSVRAKTVHAEMMTIGGRTKNVVVIQWEAQEENEVGALERALKAVIENRALVEPLMGRVVVGQKRTRDSYGWPLEVDYAFLLGTTHNSGEDISTQYK* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0953 263 SMART finulus 63 112 IPR011598 GO:0046983
Lan2g0953 263 Coils Coil 194 214 - -
Lan2g0953 263 MobiDBLite consensus disorder prediction 17 73 - -
Lan2g0953 263 PANTHER OS09G0463900 PROTEIN 36 233 - -
Lan2g0953 263 MobiDBLite consensus disorder prediction 40 73 - -
Lan2g0953 263 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 57 106 IPR011598 GO:0046983
Lan2g0953 263 CDD ACT_UUR-ACR-like 148 212 - -
Lan2g0953 263 SUPERFAMILY ACT-like 144 213 IPR045865 -
Lan2g0953 263 PANTHER TRANSCRIPTION FACTOR BHLH30 36 233 IPR045847 GO:0003700|GO:0006355
Lan2g0953 263 Gene3D - 49 113 IPR036638 GO:0046983
Lan2g0953 263 Gene3D - 142 218 - -
Lan2g0953 263 Pfam Helix-loop-helix DNA-binding domain 59 106 IPR011598 GO:0046983
Lan2g0953 263 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 60 113 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0953 Lan-Chr2 20496868 20498041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0953 54 213 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 42.105 8.25e-31 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan2g0953 HLH 6.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0953 - - aip:107608273 291.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g0953 2 20496868 20498041 Lan11g0438 11 3224436 3225672 LSH