Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0918 ATGGCAGCTGAAATTGATTTTTTCAACATAAGCACACAACTTGAGTCAGATCCCTTCAGAGGTGAATTAATGGAAGTTCTTGCACCTTATATGAAAAGTCCTTCCACAACAACAATTTCCTCTCTATCCCCACCCACTTCTCCAATTTCATACCTACCTTCTATTTCTACTTCTACTTCTCACTCTTCCCCTTACTTCAATTCATGTTCTTCATTCCAAACCCATCCCAATTTCTACACAGAAGATTGCCCAACAATGACCCATTTATTTGAAACTGGGTTATCAAACAGCCAAAATTTCACAGGCTTTGAACAACCAAGTTCTGTGCTTGGGTTTAACCACTTAACTCCATCTCCAATTAACCAGATCCAGGCCCAGGTCCAAACCCAGAACAAAATCAACAATAACAGCGACACACTCACCTTCCTGAGTCCCAAACCTGTCCCAATGAAGCAAGTGGGCTTTGCTCCAAAGCCCACCAAGCTGTACAGAGGGGTAAGACAAAGGCATTGGGGAAAATGGGTTGCTGAGATAAGACTCCCAAAGAATAGAACAAGGCTTTGGCTTGGTACCTTCAACACTGCTGAAGAAGCTGCTTTGGCTTATGATAAAGCAGCATACAAGCTCAGAGGTGATTTTTCAAGGCTCAACTTTCCCAACCTGAAGCACCAAGGTTCATGTGTTGGAGAGTACAAGCCTTTGCATTCTTCTGTTTATGCAAAACTTGATGCTATTTGTGATGATTTGAAGAAACAAGGGAAACCAGAGAAGAAGCTTGTGAGGTCTTCTAAGAAATCAAAAGTGATTTCAAAGGAAGAGGATAACAATGATAACAACTGCAAGGTTGAAACTTCATTGTCTTCTGTTGTGACAGATAGTGAAGGCTCTGTTGGGTCTTCTCCTCTGTCTGATCTTACATTTGATGATTTCATGGAGGCACAGTGGGAAGCTCCTTCAGAACATTTTAATCTGATGAAGTTTCCTTCTTATGAGATAGATTGGGATTCACTGTGA 1014 0.4142 MAAEIDFFNISTQLESDPFRGELMEVLAPYMKSPSTTTISSLSPPTSPISYLPSISTSTSHSSPYFNSCSSFQTHPNFYTEDCPTMTHLFETGLSNSQNFTGFEQPSSVLGFNHLTPSPINQIQAQVQTQNKINNNSDTLTFLSPKPVPMKQVGFAPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFNTAEEAALAYDKAAYKLRGDFSRLNFPNLKHQGSCVGEYKPLHSSVYAKLDAICDDLKKQGKPEKKLVRSSKKSKVISKEEDNNDNNCKVETSLSSVVTDSEGSVGSSPLSDLTFDDFMEAQWEAPSEHFNLMKFPSYEIDWDSL* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0918 337 Pfam AP2 domain 163 211 IPR001471 GO:0003700|GO:0006355
Lan2g0918 337 ProSiteProfiles AP2/ERF domain profile. 162 219 IPR001471 GO:0003700|GO:0006355
Lan2g0918 337 CDD AP2 161 221 IPR001471 GO:0003700|GO:0006355
Lan2g0918 337 PRINTS Ethylene responsive element binding protein signature 163 174 IPR001471 GO:0003700|GO:0006355
Lan2g0918 337 PRINTS Ethylene responsive element binding protein signature 185 201 IPR001471 GO:0003700|GO:0006355
Lan2g0918 337 SMART rav1_2 162 225 IPR001471 GO:0003700|GO:0006355
Lan2g0918 337 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 1 336 - -
Lan2g0918 337 Gene3D AP2/ERF domain 162 220 IPR036955 GO:0003700|GO:0006355
Lan2g0918 337 SUPERFAMILY DNA-binding domain 162 219 IPR016177 GO:0003677
Lan2g0918 337 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0918 Lan-Chr2 19826527 19828188 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0918 1 337 AP2-EREBP Transcription Factor Family AT1G78080 46.301 3.29e-79 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lan2g0918 AP2 3.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0918 K09286 - gmx:732559 340.887
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g0918 2 19826527 19828188 Lan11g0474 11 3611704 3613568 LSH
Lan2g0918 2 19826527 19828188 Lan9g1112 9 18477692 18479258 LSH
Lan2g0918 2 19826527 19828188 Lan15g0843 15 17643013 17653566 PCT
Lan2g0918 2 19826527 19828188 Lan14g0645 14 13384605 13386440 PCT
Lan15g0843 15 17643013 17653566 Lan2g0918 2 19826527 19828188 PCT
Lan14g0645 14 13384605 13386440 Lan2g0918 2 19826527 19828188 PCT