Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0907 ATGCCTCACTCTGACACTCGCCGCCACTCTCCGCCCCTCCCCAGCCACGTCGACCGTGAAATCTGGCAAGCCTGTGCCGGCGCCGCCGTCCAAATCCCCAACGTTAATTCTAGGGTTTACTACTTCCCTCAGGGCCACCTCGAACATGCTTCTCCCCCTCTCAATCCTCACTACTCACTCTCCTCCCTCTCCGTCGTACACTGCCGCGTCTCCAACGTTCAATTCCTCGCCGATCCTTTCTCCGACGAGGTTTTCGCTAAGATCCTACTGGAACCTGTCTCTAACCGATTCGCCAACGATTCGCATAATGAAGTCGGTGGTGATGGTGGTAAGGTTGTTTCGTTCGCCAAGATTTTGACGCCTTCTGATGCTAACAACGGCGGTGGATTCTCTGTTCCGAGGTTCTGCGCTGACTCCGTTTTACCGCCGCTGAACTTCGAGGCTGATCCGCCGCTCCAGATCCTGAACGTCACCGATGTTCACGGCAAGGTCTGGCAGTTCCGGCACATTTATCGTGGCACGCCGAGGCGGCACTTGCTTACCTCCGGCTGGAGCAAGTTTCTGACTCTCAAGAAGCTCGTCGCCGGAGATTCGGTCATTTTCATGAAGAACTCGAAGGGATTGGTGTTCGTTGGAATTCGCAGGGTGTTCCAGTTCTCCGGCACGGAAAAGAATAGAGCTGATGAGGAGGAGGAAGAAGGGGACAGTGGTGGTTATTGGAGGAGAGGGAGGAAGAAGGTGACAGTGAAGGCTGTTGCAGAGGTGGCGGAAGCGGCTGCGCAGGGTATGCCGTTTGAGGTTGTGCATTATCCGAGTGCCGGGTGGTCGGATTTCGTGGTGAAGGCTGAGGTTGTGGAAGAAGCTATGAGAGGTGCGTGGGGTCACGGGATGAGAGTGAAGATGACTATGGAGACAGAGGATTCATCCAGGATGACCTGGTTTCAGGGGACAGTGACTTCAGCTTCTGTCCCTGATAATGGACCCTGGCGAGGTTCTCCTTGGCGCATGCTTCAGGTTGCATGGGACGAACCTGAAGTTTTGAAGAATGCAAAGCGAGTCAGCCCTTGGCAGGTTGAACTTGTTTCTCCACAACCTTCTCTTCGTACAGCATTCCCCCCAACAAAAAAGTTTAGATTTGCCCAGGTTGCGGGGGTATTAAGTGATAGAGAGGGAGATCCCTACTTTCCTATGACATGGTTCACTAATTCAACAATGGAACACTTGAATCAAACATTGTTGAGTTCTGAAACTTTTCCTGCGGGCATGCAGGGAGCCAGGCATGATGTAGTTTCTGCATCAAAAAATTTCAATTTTACAAATAGTATTGATAACCATTATCTTCGTTTGGGTAGTAGTTCCTTTGTGAACAATACAATGCCAATGTTGGAAACTGTATCAACCGAGCTAAACATCGGCAGTTCTCAATCTGATGACTTGTCACCAAATAGCCAGAGCAGTTTGCATTCCTTTTGCACAGAGTTTGCTGGGGCCTACAACTGCAACACTGCAAAAGTTGGCTCTGGTTCAATTCTGCTATTTGGTAAGATCATACAGCCTGTTGTAAGTGACATACATGATGCTTGTTGTATGGGAGATAATGGCAACAAGGGCTGCGGTGAAACTGAAGGCATTGACAACCCACCAGATCATTCTTTGACTTACTCGAAATTACTCAACAGGCTTGATGTCCAAAGCGAACTACCCTTGCCAGTTGAGGCGTCTTTTCTGTGA 1731 0.5026 MPHSDTRRHSPPLPSHVDREIWQACAGAAVQIPNVNSRVYYFPQGHLEHASPPLNPHYSLSSLSVVHCRVSNVQFLADPFSDEVFAKILLEPVSNRFANDSHNEVGGDGGKVVSFAKILTPSDANNGGGFSVPRFCADSVLPPLNFEADPPLQILNVTDVHGKVWQFRHIYRGTPRRHLLTSGWSKFLTLKKLVAGDSVIFMKNSKGLVFVGIRRVFQFSGTEKNRADEEEEEGDSGGYWRRGRKKVTVKAVAEVAEAAAQGMPFEVVHYPSAGWSDFVVKAEVVEEAMRGAWGHGMRVKMTMETEDSSRMTWFQGTVTSASVPDNGPWRGSPWRMLQVAWDEPEVLKNAKRVSPWQVELVSPQPSLRTAFPPTKKFRFAQVAGVLSDREGDPYFPMTWFTNSTMEHLNQTLLSSETFPAGMQGARHDVVSASKNFNFTNSIDNHYLRLGSSSFVNNTMPMLETVSTELNIGSSQSDDLSPNSQSSLHSFCTEFAGAYNCNTAKVGSGSILLFGKIIQPVVSDIHDACCMGDNGNKGCGETEGIDNPPDHSLTYSKLLNRLDVQSELPLPVEASFL* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0907 576 Gene3D - 294 365 - -
Lan2g0907 576 SMART B3_2 115 217 IPR003340 GO:0003677
Lan2g0907 576 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 10 573 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lan2g0907 576 SUPERFAMILY DNA-binding pseudobarrel domain 112 225 IPR015300 -
Lan2g0907 576 Gene3D - 112 217 IPR015300 -
Lan2g0907 576 CDD B3_DNA 114 215 IPR003340 GO:0003677
Lan2g0907 576 Pfam B3 DNA binding domain 115 215 IPR003340 GO:0003677
Lan2g0907 576 ProSiteProfiles B3 DNA-binding domain profile. 115 217 IPR003340 GO:0003677
Lan2g0907 576 PANTHER AUXIN RESPONSE FACTOR 10 573 - -
Lan2g0907 576 Pfam Auxin response factor 255 338 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0907 Lan-Chr2 19662338 19666695 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0907 16 517 B3 DNA Binding Superfamily AT1G77850 49.905 2.70e-167 487
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lan2g0907 B3 9.7e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0907 - - aip:107624033 716.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g0907 2 19662338 19666695 Lan14g0632 14 13265071 13269185 PCT
Lan2g0907 2 19662338 19666695 Lan3g1585 3 27467391 27471413 PCT
Lan14g0632 14 13265071 13269185 Lan2g0907 2 19662338 19666695 PCT
Lan3g1585 3 27467391 27471413 Lan2g0907 2 19662338 19666695 PCT