Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0877 ATGGATACTGAAGAAGAAACTGTCAATGCCAAAAATCCAAAGCATGTTGATCGGGATCGATGTTTGGAAATGGAGAGTGTAAATAAAGGGATGGCACTTGAAGAAGGGAATGAGATTCGGTGCTTGAAGAAAGAAGCTGTGGATAATGTGGTGGGAACTGAAGATGAGAATAAGGTTCAATGCTTGAAGAATGAAACTGTAAATAATGGAGTGGCAATTGCTGATGGGAATGGTGTTGCTGAAGGTAAAGAGGTCCCGTGTTTGAAGAATGGAACTGTAAATAATGGAGTAGTGATTGCTGATGGGAACAGTGTTTCTAAAGGAAAAGATGTTCGGTACTTGAAGAGCCGAACTGTTAGTAATGGAGTGGAAATTACTAAGGGGAAAGGTATTGCTGAGGGGGACTCTACTGGAGTTGTATATTTGCGAACTTATAAGAGGCGTAAGCATGTAAAATCGATTTCAGAAAGCAAGGTTCAGGAAGTCAGCAAAGGACGTGTGGAAGCTGCAAGTCGCTTATCAGACCAGGCTGTGAAGAAACCATGTGATTTAGCTGTAGGCAATACTTCAAAAGATTATTCACATGGACATTGGGTAGAAGTTGTGCTAAACCATTTATATCATTCAATAGGTGGTAGCAATGGCAGCATAGAGGGGTCCGTAAGGGAAGCACTCATGAACAATCCCAAATTCAGTTGTGCCCCTACATTTACAGAAATTTTAAAAAATAACAAAGATGGTCAAGAATGCTCCTCCCAATCTGAGTTATTGTCTCATAGATTACAGAATGAAACTAATGGACATGCAAATATCATGCATAATGGATGCTCTAGTAAACCAGTTGCTCCTGGTGGTACTGAGAGGTGTGAACGTGTGTTATGTAATATCTTAACCTCTGAAAAATTCAGTTCATTATGTAAGGTGCTACATGAAAATTTCCAAGGAATCAAACTTGAAAGGGTATTTGACTTTAATGTCATAAACACGAGGATGAAAGAACAAGCTTATGAAGATTCACCTGCACTTTTCTTGTCAGATATTGAACAGGTTTGGAGAAAGCTTCAAGATGCTGGAAATGAGATCGTTGCTATTACCAAAAGTCTCTCGAACATGTCAAAAGCTTCCTACTGTGAGAAGTTATATAATTGGGAATCCAACACTCAAATAAAACCAGAGCAGACAGAAGAATGTGCTACATATAAAACTTGCATTTGCAGGCATTGTGGAAAGAAGGCAGATGGGACGGATTGTTTGGTTTGTGATTCATGTGAGGAGATGTACCACGTTCCCTGTATTGAGCCTGCTGTGAAAGAAATACCCCAAAAAAGCTGGTTCTGTGCGAATTGTTCTGATAAAGAAATTGGATGTCCACATGAGAAGTGTGTGGTGTGTGAAAGGTTGAACGTCCCGGAGGCCCTGAACAACGATGTTGGTATGGAAAACATCCCTACAGATGAGGAAACACTGAAGGAGATGGAAGAGAATTCAAATGGTACTCATGATGATGGAATTCAAGTGTCCATAGGTGGGGGAGACTCACCTGATTGCAAAATTTGTCGAGAAGTGGTGGATGGTGAAAAAATGAAAATATGTGGTCACCCGTTTTGCCCCAGTAAATACTACCATGTAAGGTGTTTGTCAAGTAAGCAGATGAAGTTGTATGCTCAATGTTGGTACTGCCCTTCTTGTTTATGCCGAGTTTGCCTCACTGATCAAGATGATGATAAGATTGTTCTCTGTGATAGCTGTGATCATGCATACCACATCTATTGCATGAAACCTCCACGAACTTCTGTTCCAAAAGGGAAATGGTTCTGCAGAAAATGCGATGCAGGGATCCAAGCAATACGCCGAGCAAAAAAGGCATACGAGAGTAAGAACTGTAAAACGGATGAAAATGTTTCGAAGCCAAATGATAAGATATGGTGCAATAAACGAGGACGGGAAGTAGTGGGAGGAATGGACATGCTTTTAACTGCAGCCAATACTTTGAATTTTGAAGAGAACTTAACTGAAACCCAGACTCAATCAAAGAGAACTTGA 2043 0.4048 MDTEEETVNAKNPKHVDRDRCLEMESVNKGMALEEGNEIRCLKKEAVDNVVGTEDENKVQCLKNETVNNGVAIADGNGVAEGKEVPCLKNGTVNNGVVIADGNSVSKGKDVRYLKSRTVSNGVEITKGKGIAEGDSTGVVYLRTYKRRKHVKSISESKVQEVSKGRVEAASRLSDQAVKKPCDLAVGNTSKDYSHGHWVEVVLNHLYHSIGGSNGSIEGSVREALMNNPKFSCAPTFTEILKNNKDGQECSSQSELLSHRLQNETNGHANIMHNGCSSKPVAPGGTERCERVLCNILTSEKFSSLCKVLHENFQGIKLERVFDFNVINTRMKEQAYEDSPALFLSDIEQVWRKLQDAGNEIVAITKSLSNMSKASYCEKLYNWESNTQIKPEQTEECATYKTCICRHCGKKADGTDCLVCDSCEEMYHVPCIEPAVKEIPQKSWFCANCSDKEIGCPHEKCVVCERLNVPEALNNDVGMENIPTDEETLKEMEENSNGTHDDGIQVSIGGGDSPDCKICREVVDGEKMKICGHPFCPSKYYHVRCLSSKQMKLYAQCWYCPSCLCRVCLTDQDDDKIVLCDSCDHAYHIYCMKPPRTSVPKGKWFCRKCDAGIQAIRRAKKAYESKNCKTDENVSKPNDKIWCNKRGREVVGGMDMLLTAANTLNFEENLTETQTQSKRT* 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0877 680 ProSiteProfiles Zinc finger PHD-type profile. 562 612 IPR019787 -
Lan2g0877 680 ProSiteProfiles Zinc finger PHD-type profile. 402 452 IPR019787 -
Lan2g0877 680 PANTHER HISTONE ACETYLTRANSFERASE 210 668 - -
Lan2g0877 680 ProSitePatterns Zinc finger PHD-type signature. 403 449 IPR019786 -
Lan2g0877 680 Pfam PHD-finger 404 451 IPR019787 -
Lan2g0877 680 Pfam PHD-finger 565 610 IPR019787 -
Lan2g0877 680 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 508 616 IPR013083 -
Lan2g0877 680 ProSiteProfiles Zinc finger RING-type profile. 516 563 IPR001841 -
Lan2g0877 680 SUPERFAMILY FYVE/PHD zinc finger 510 564 IPR011011 -
Lan2g0877 680 SUPERFAMILY FYVE/PHD zinc finger 379 450 IPR011011 -
Lan2g0877 680 SUPERFAMILY FYVE/PHD zinc finger 564 616 IPR011011 -
Lan2g0877 680 SMART PHD_3 404 450 IPR001965 -
Lan2g0877 680 SMART PHD_3 515 564 IPR001965 -
Lan2g0877 680 SMART PHD_3 565 610 IPR001965 -
Lan2g0877 680 Gene3D - 308 453 - -
Lan2g0877 680 PANTHER D4, ISOFORM A 210 668 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0877 Lan-Chr2 19202267 19208711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0877 564 625 C2H2 Transcription Factor Family AT3G01460 46.774 1.21e-13 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lan2g0877 PHD 5.1e-13 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0877 - - lang:109337790 1404.81