Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0873 ATGGTGGAGGATCGAAGGCTGGTGCTGATTTTGATCAGCACCTGCATTTTTGGTTTGATCCCTATTCCCACCAATGGTGACACAGATCCAAATGATGTTAATGCGCTAAAGGTTATGTTTCAAAGTATGAACTCACCATCCCAGCTAAATTGGCCTCAAAATGGTAACGATCCTTGTGGACAGTCTTGGAAAGGCATTACTTGCTCAGGCAAACGAGTCACAGAGATTAAGTTACCTGGTCTTGGACTAAGTGGAAATTTGGGTTACCAGCTACAATCCTTGACAGCTGTAACCACACTAGACTTGAGTAACAACAAACTTAGTGGAGCCATACCATACCAACTTCCTCCAAATGTGACTCGCTTAAATCTCGCTAATAATAATTTCAATGGGCCGGTCCCGTATTCTCTTTCTGGAATGACTTCTCTTACGGACCTGAATCTTGGTCATAATCAGCTCCAGCAAGGACTGAGTGTCAACTTTCAACAGCTTACTTCCTTATCTACATTGGATCTCTCTTTCAATTCTCTGACAGGAGACCTCCCTCAGACTGTGAGCTCACTTTCAAGCATATCTACCATGAATCTACAAAACAACCAGTTTACAGGTCCAATTAACGTCCTCGCGAATCTGCCTCTTGAGAATCTGAATGTGGAAAACAATAAGTTTTCAGGCTGGATACCTGAACAGTTGAAAGGCATAAACCTAAAAACGGGTGGTAATACATGGAGCTCAGGACCTGCACCCCCACCTCCTCCTGGCACACCTCCAATAACAAAACCCATCCGAGATCACAAATCTGGTGGACATAGCACCCCTTCGGATTCTAGCACAAGTGGTGGGGGCAAAAAATCGGGTATAGGAGGTGGTGCCATTGCTGGAATTGTGATCTCCATCTTGGTTGTCGGGGCAATATTGGCATTCTTTCTGGTGAAGAGAAAATCCAAGAAGCCGTCTTCAAGCATGGAAAAGTTTGACAATCAGCCCTTAGCTCCTCTTACCTCAAATGAAGCACATGACATGAATTATATGCAATCTTCGTCTGTAATTGATTTGAAGACATTTGATCCTCCTCCTGCACCCCCAATAATTCTTAAGCCTCCACCTTTGGATCGTCATAAATCAGCTGATGAGGATGACTTTTCGAATAAGCCCATTATTGCCAAGAAGACCATACCAGCTCGTGCAAATGTGAAATCATATTCAATAGCCGACCTGCAGATTGCTACCGGAAGCTTCAGTGTAGATCATCTTCTTGGTGAGGGTTCTTTTGGACGTGTATACCGTGCTGATTTTGATGACGGAAAGGTTTTTGCAGTGAAGAAGATAGATTCATCTGTCCTTCCCAATGATTTGTCTGAAGAGTTTACAGAAATAGTTTCAAGTATCTCTCATTTGCATCATCCAAATGTTACAGAGCTTGTAGGTTATTGTTCAGAGCATGGGCAACACCTCCTAGTTCATGAGTTTCACAAAAATGGATCACTGCATGACTTCCTTCACCTACCTGATGAGTATAGTAAACTATTGATATGGAATACTCGTGTCAAAATTGCTTTGGGGACTGCACGTGCCTTAGAGTACCTACACGAAGCTTGTTCGCCATCTGTTGTTCACAAGAATATTAAGTCGGCCAATATACTTCTTGATACAGATTTTAATCCTCATCTTTCAGACAGTGGATTGGCAAGCTATATTCCAAATGCCAACCAGGTTTTGAACAATAATTCTGGACTTGGGTATGATGCCCCCGAAGTTGGCTTGTCTGGTCATTATAGTCTTAAGAGCGATGTATATAGCTTTGGAGTTGTCATGTTGGAACTTCTCAGTGGTCGGAAACCATTTGATAGCTCAAGGCCAAGATTTGAGCAGTCTTTAGTTCGATGGGCAACACCTCAACTTCATGATATTGATGCATTGGCCAAAATGGTTGATCCTGTACTAGAAGGGCTATACCCTATTAAGTCTCTGTCTCGAATTGCTGATGTTATTGCTCTTTGTGTTCAGCCGGAGCCAGAATTCCGACCACCTATGTCGGAAGTGGTTCAAGCACTGGTTCGATTAGTGCAACGAGCTAACTTGAGCAAGCGAACATATGGAGCTGATCAAGGAGGATCCAACCAAGGGGGTGATGATCTAGAAGACATGTAA 2151 0.4314 MVEDRRLVLILISTCIFGLIPIPTNGDTDPNDVNALKVMFQSMNSPSQLNWPQNGNDPCGQSWKGITCSGKRVTEIKLPGLGLSGNLGYQLQSLTAVTTLDLSNNKLSGAIPYQLPPNVTRLNLANNNFNGPVPYSLSGMTSLTDLNLGHNQLQQGLSVNFQQLTSLSTLDLSFNSLTGDLPQTVSSLSSISTMNLQNNQFTGPINVLANLPLENLNVENNKFSGWIPEQLKGINLKTGGNTWSSGPAPPPPPGTPPITKPIRDHKSGGHSTPSDSSTSGGGKKSGIGGGAIAGIVISILVVGAILAFFLVKRKSKKPSSSMEKFDNQPLAPLTSNEAHDMNYMQSSSVIDLKTFDPPPAPPIILKPPPLDRHKSADEDDFSNKPIIAKKTIPARANVKSYSIADLQIATGSFSVDHLLGEGSFGRVYRADFDDGKVFAVKKIDSSVLPNDLSEEFTEIVSSISHLHHPNVTELVGYCSEHGQHLLVHEFHKNGSLHDFLHLPDEYSKLLIWNTRVKIALGTARALEYLHEACSPSVVHKNIKSANILLDTDFNPHLSDSGLASYIPNANQVLNNNSGLGYDAPEVGLSGHYSLKSDVYSFGVVMLELLSGRKPFDSSRPRFEQSLVRWATPQLHDIDALAKMVDPVLEGLYPIKSLSRIADVIALCVQPEPEFRPPMSEVVQALVRLVQRANLSKRTYGADQGGSNQGGDDLEDM* 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0873 716 SMART LRR_typ_2 140 163 IPR003591 -
Lan2g0873 716 SMART LRR_typ_2 94 122 IPR003591 -
Lan2g0873 716 SMART LRR_typ_2 164 188 IPR003591 -
Lan2g0873 716 Pfam Protein tyrosine and serine/threonine kinase 415 685 IPR001245 GO:0004672|GO:0006468
Lan2g0873 716 Pfam Leucine rich repeat 97 153 IPR001611 GO:0005515
Lan2g0873 716 Gene3D Transferase(Phosphotransferase) domain 1 492 705 - -
Lan2g0873 716 MobiDBLite consensus disorder prediction 322 337 - -
Lan2g0873 716 MobiDBLite consensus disorder prediction 318 337 - -
Lan2g0873 716 SUPERFAMILY Protein kinase-like (PK-like) 397 685 IPR011009 -
Lan2g0873 716 MobiDBLite consensus disorder prediction 237 284 - -
Lan2g0873 716 Gene3D Ribonuclease Inhibitor 29 248 IPR032675 -
Lan2g0873 716 PANTHER OS01G0253100 PROTEIN 18 713 IPR045271 GO:0004714|GO:0006468
Lan2g0873 716 Pfam Leucine rich repeat N-terminal domain 30 69 IPR013210 -
Lan2g0873 716 PANTHER STRUBBELIG-RECEPTOR FAMILY 6 PROTEIN 18 713 - -
Lan2g0873 716 SUPERFAMILY L domain-like 28 231 - -
Lan2g0873 716 ProSiteProfiles Protein kinase domain profile. 413 688 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan2g0873 716 PRINTS Leucine-rich repeat signature 97 110 - -
Lan2g0873 716 PRINTS Leucine-rich repeat signature 164 177 - -
Lan2g0873 716 ProSitePatterns Protein kinases ATP-binding region signature. 419 442 IPR017441 GO:0005524
Lan2g0873 716 Gene3D Phosphorylase Kinase; domain 1 377 490 - -
Lan2g0873 716 MobiDBLite consensus disorder prediction 245 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0873 Lan-Chr2 19118762 19126700 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0873 8 702 Strubbelig Receptor Gene Family AT1G53730 65.674 0.0 829
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Lan2g0873 PK_Tyr_Ser-Thr 2.5e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0873 - - gmx:100780323 1043.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0594 11 4710526 4717917 Lan2g0873 2 19118762 19126700 LSH
Lan9g1024 9 17481203 17488710 Lan2g0873 2 19118762 19126700 LSH
Lan16g1129 16 18361185 18369032 Lan2g0873 2 19118762 19126700 PCT
Lan2g0873 2 19118762 19126700 Lan16g1129 16 18361185 18369032 PCT