Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0869 ATGAGCAAGATGAAACAATTCTATGTCAGAGTCAGAGATTCCGGAAAAATGAAACAAATCTTTGACAGAATCTCTGACTCCTCCGACAAGAATAAGAAGAAACTCTTCTTGTCTCTTTTTGCTACTCTTCTTCTTGTTACCTCAGTTGTAACCATTGGTGTAGAAGTTAACTCTCATAAAAACTCAAACAACAATAATGCTACCTCTTCTTCACTCTCACTCTCCCACCATTCCCACACCATAATCAAAAGCGCATGCAGCTCCACATTCTACCCTGAACTATGCTTCTCAGCTATATCCTCTGAACCAGGCATCACTCACAAAGTTTCTACCCACAAAGATGTCATTGAATTGTCCTTAAATGTCACCACAAGAGCCGTTGAGCACAACTTCTTCATCTTAGAGAAGCTATTGAAAACACAGAAGGGTCTCTCAAATAGAGAAAAAACTGCACTCCATGATTGTTTGGAGATTATAGATGAAACCCTTGATGAACTACAAGAAGCTCGTGATGATATAAGATTGTATCCTAACAAGAAAACATTGTATCAGCATGCTGATGACCTTAAAACCCTTATAAGTTCTGCCATTACTAACCAGTTCACTTGCTTAGATGGTTTCTCACATGAAGATGCTGATAAGAAGGTGAGGGAGGTTCTGGAAAAAGGGCTTGTTCATGTGGAACACTTGTGCAGCAATTCATTGGCCATGACAAAGAACATGACTGATAATGATATAGCCAACTATGAACAGAAGATGATGGTGGTGGGAAAGAAGAACAGAAAGCTCATGGAGGAGGAGGAGACCGGGGTCAAGTGGCCGGAGTGGATTTCAACCGGGGATAGGAGGCTTTTGCAGGCGACGGCAGTGAAGGCAGACTTAGTGGTGGCAGCGGACGGCAGTGGGAACTTCAAGACGGTGTCGGCTGCGGTGGCTGCTGCTCCTGAGAAGAGTAGCAAGAGGTTTGTTATCAGAATTAAGGCTGGGGTGTATAGAGAGAATGTGGAGGTGCCAAAGAAGAAAACAAATATAATGTTCTTGGGTGATGGAAAAACTAATACTATCATCACCGGTAGCAGAAATGTTAAAGATGGTAGCACAACCTTTCACTCTGCCACTGTCGCCATAGTGGGTGGACAATTTTTAGCAAGAGATATAACCTTTGATAACACAGCTGGTCCCTCAAAGCACCAAGCAGTAGCCCTAAGAGTTGGTGCTGACCTCTCAGCCTTCTACAACTGTGACATTCTTGCATACCAAGACACTCTTTATGTCCACAGCAATCGCCAATTCTTCGTTAATTCCCTCATAGCAGGAACAGTAGATTTCATCTTTGGTAACTCAGCAGTAGTATTCCAAAACTGTGACATCCATGCAAGACGTCCAGATTCAGGTCAAAAGAACATGGTCACTGCTCAAGGAAGAGTTGATCCAAACCAAAACACTGGCATTGTTATACAAAAGTGTAGAATTGGTGCAACTTCAGATTTGGAACCTGTGAAGAAAAATTTCCCTACATATCTTGGTAGGCCTTGGAAGGAGTATTCTAGAACAGTGATTATGGAAACAACTATAAGTGATGTTATTGATCCTGCTGGGTGGCATGAATGGAATGGAAACTTTGCTTTGAACACTTTGGTTTATAGGGAATATCAGAATACCGGGCCTGGTGCTGTAACTACAAATAGGGTTGCATGGAAAGGGTTTAAGGTTATTACTAATGCTGCTGAGGCCCAGGCTTTTACTGCTGGGAGCTTTATTGCGGGCTCTAACTGGTTGCCCTCTACTGGTTTTCCTTTCACTCTTGGGCTATAA 1815 0.4264 MSKMKQFYVRVRDSGKMKQIFDRISDSSDKNKKKLFLSLFATLLLVTSVVTIGVEVNSHKNSNNNNATSSSLSLSHHSHTIIKSACSSTFYPELCFSAISSEPGITHKVSTHKDVIELSLNVTTRAVEHNFFILEKLLKTQKGLSNREKTALHDCLEIIDETLDELQEARDDIRLYPNKKTLYQHADDLKTLISSAITNQFTCLDGFSHEDADKKVREVLEKGLVHVEHLCSNSLAMTKNMTDNDIANYEQKMMVVGKKNRKLMEEEETGVKWPEWISTGDRRLLQATAVKADLVVAADGSGNFKTVSAAVAAAPEKSSKRFVIRIKAGVYRENVEVPKKKTNIMFLGDGKTNTIITGSRNVKDGSTTFHSATVAIVGGQFLARDITFDNTAGPSKHQAVALRVGADLSAFYNCDILAYQDTLYVHSNRQFFVNSLIAGTVDFIFGNSAVVFQNCDIHARRPDSGQKNMVTAQGRVDPNQNTGIVIQKCRIGATSDLEPVKKNFPTYLGRPWKEYSRTVIMETTISDVIDPAGWHEWNGNFALNTLVYREYQNTGPGAVTTNRVAWKGFKVITNAAEAQAFTAGSFIAGSNWLPSTGFPFTLGL* 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0869 604 Coils Coil 246 266 - -
Lan2g0869 604 CDD PMEI-like_3 84 242 - -
Lan2g0869 604 Pfam Pectinesterase 293 589 IPR000070 GO:0030599|GO:0042545
Lan2g0869 604 Pfam Plant invertase/pectin methylesterase inhibitor 81 237 IPR006501 GO:0004857
Lan2g0869 604 ProSitePatterns Pectinesterase signature 1. 318 337 IPR018040 -
Lan2g0869 604 SMART PMEI_2 77 237 IPR006501 GO:0004857
Lan2g0869 604 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 80 242 IPR035513 -
Lan2g0869 604 ProSitePatterns Pectinesterase signature 2. 437 446 IPR033131 -
Lan2g0869 604 Gene3D - 287 604 IPR012334 -
Lan2g0869 604 PANTHER PECTINESTERASE 30 603 - -
Lan2g0869 604 Coils Coil 152 172 - -
Lan2g0869 604 PANTHER PECTINESTERASE 30 603 - -
Lan2g0869 604 SUPERFAMILY Pectin lyase-like 288 603 IPR011050 -
Lan2g0869 604 Gene3D Invertase/pectin methylesterase inhibitor family protein 77 243 IPR035513 -
Lan2g0869 604 TIGRFAM PME_inhib: pectinesterase inhibitor domain 68 241 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0869 Lan-Chr2 19052721 19059422 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0869 17 604 Carbohydrate Esterase AT3G14310 68.439 0.0 820
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0869 K01051 - pvu:PHAVU_010G123100g 878.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g0869 2 19052721 19059422 Lan9g1030 9 17547567 17552376 LSH
Lan11g0588 11 4675954 4679210 Lan2g0869 2 19052721 19059422 LSH
Lan9g1031 9 17556951 17559855 Lan2g0869 2 19052721 19059422 LSH