Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0864 ATGTTTCAGTTTCATCCGCAAGGAACTATCAAACAGACTTGTACTCTGCTTGCTGTCACTTGTGGCTCAAGTTTTGAGCAGCAGAAGCCCTCACACAATCAACATAATTACCCTTTCCCTGAATTAGTTTCTGCGGGGCGTCTCGAGGTTCAAACTCTGAGCAATCCAGAAAAGGAACAGTTTCATAAGATTCTTGAGTCATATCAACCTAATATTGTTTACTTACAAGGAGAACATCTACCGAATGATGAAGTTGGTTCACTGGTTTGGCAGGGTGTGGAGTTGTCCACCCTTGAAGCTATTACAGAGCTCTTTGGTCCCACATTGCCGACCACTGTTTATTTAGAAATCCCAAATGGAGATAGTTTTGCAGAGGCTCTTCGGCTGAAGGGAATCCCATATGTGATATATTGGAAGAATGTTTTTTCTTGCTATGCTGCATGTCATTTTCGTCAAGCATTTCTTTCAGTGGTAAAGAGTTCATCTACGCATACATGGGATGCTTTCCGCCTAGCACATGCCTCTTTTGAGCTTTACTGTGGTGAAAGCCATCAAGTACTTTTTGATGACAGACATGATACTAATTGCGAGATGGGGCCACACCTTCTTGGCAACCTTCTCCAAATTAATGCTGACCCTCCTGAGATGAGTGAAGATGACGAAGAAAATTCCTCAGGCAGTCTTCCTGATATAACGATACATGATGATGAAGTGAACTTGAGGTTTCTCGTCTGCGGTGCACCTTCCACTGTTGATGAGTCATTGCTGAGATCATTGGAGGACGGACTCAGAGCTCTCTTAACTATTGAAATACGTGGTTGCAAGCTCCACGGCAAGTTTAGTGCTCCCCCACCACCTTTTCAGGCAGCCGCTTTTTCTCGTGGAGTTGTGACCATGCGATGCGATATATCAACCTGTAGTTCCGCATATATCTCACTTTTGGTATCAGGCAGCGCACAAACTTTGTTTAGTGATCAGCTCCTGGAGAGTCATATAAAAAATGAGATAATTGGGAAGAGTCAACTAGTTCATGCACAACTCAACAATGAGGGGAGCAAACAGAATGTCTCTGAACCTCGCAGATCTTCTTCAATTGCTTGTGGAGCAACAGTATTTGAAATTTGCATGAAGCTTCCTCAATGGGCTTTGCAGATTTTGAGACAGCTAGCACCCTATGTTTCTTATAGAAGTTTAGTTGCACTTGGCATTGCTAGTATTCAAGGTCTGCCTGTAGCTTCTTTCAAGACAGATGATGCTGAGCGCTTACTTTTCTTCTATCAAAGCAGTGAGAAAGATAGCCATACAAGCAATATAATTTTTAGCAATCCTCCTGGTTGGTTGAAACCACCCCCTCCTACTAGAAAGAGGTGTGAACCAAGCCAAGGAGCTAAATCTGGGCCCCATGATGGTTTCTTTGCAGGGAAAGGTGTTGTTCAAAAAGTAGATGAGGAGGAAAAGGATAGAAAAATGGTGAATGGAACGACTAGCACACCCTTAAGTCCAGCTAGGCAAAGATTAAAAGTATCTGCCATGAGGCCTATTCCTCATTCACATCGCCATAGACCGACACCTTTTTGTGGGCCTTCTGAGACAAGTGGTTTTGATAGGGCCCAAGTTGAGGCTAATTTGCCTCTTGCTATCCCTACAAAGCGGACCAGTATTGGACCAACATCTGCAACACAGAGAAAATCATTTGCATCCTCAGCTCAGTCTAAGCAGCTTATTTCATTAAACCCATTGCCCTTGAGAAAACATGGCTGTGGCAGAGGCCCAGTGCAGATTTGCTCTGAGGAGGAATTTCTTAAAGATGTTATGGAGTTTTTGATTCTTCGTGGATATAGTCGATTGATTCCTCGGGGAGGGATAACTGAGTTCCCTGATGCCATACTCAACGGAAAACGCCTTGATCTCTACAACTTGTATAAAGAGGTGGTTACCAGAGGAGGATTCCATGTTGGCAATGGCATCAACTGGAAGGGACAAATCTTCTCAAAGATGTGCAATTACACATCCACCAATAGAATGACTGGTGTCGGAAATACGCTCAAAAGACATTATGAAACCTACCTTTTAGAATATGAATTTGCACATGATGATGTGGATGGAGAGTGCTGCTTGTTGTGTCACAGTAGTGCAGGTGGGGATTGGGTGAATTGTGGCATATGTGGTGAGTGGGCCCACTTTGGCTGTGATAGAAGGCATGGTCTTGGCGCATTCAAGGATTATGCAAAAACAGATGGGCTAGATTATATATGTCTTCATTGTAGTGTTACAAATTTCAAGAAACAAAGTGTTGCTAATGTGTACTCTCAAAGGTCAATGTCATCACAACCCCTTTGA 2340 0.4329 MFQFHPQGTIKQTCTLLAVTCGSSFEQQKPSHNQHNYPFPELVSAGRLEVQTLSNPEKEQFHKILESYQPNIVYLQGEHLPNDEVGSLVWQGVELSTLEAITELFGPTLPTTVYLEIPNGDSFAEALRLKGIPYVIYWKNVFSCYAACHFRQAFLSVVKSSSTHTWDAFRLAHASFELYCGESHQVLFDDRHDTNCEMGPHLLGNLLQINADPPEMSEDDEENSSGSLPDITIHDDEVNLRFLVCGAPSTVDESLLRSLEDGLRALLTIEIRGCKLHGKFSAPPPPFQAAAFSRGVVTMRCDISTCSSAYISLLVSGSAQTLFSDQLLESHIKNEIIGKSQLVHAQLNNEGSKQNVSEPRRSSSIACGATVFEICMKLPQWALQILRQLAPYVSYRSLVALGIASIQGLPVASFKTDDAERLLFFYQSSEKDSHTSNIIFSNPPGWLKPPPPTRKRCEPSQGAKSGPHDGFFAGKGVVQKVDEEEKDRKMVNGTTSTPLSPARQRLKVSAMRPIPHSHRHRPTPFCGPSETSGFDRAQVEANLPLAIPTKRTSIGPTSATQRKSFASSAQSKQLISLNPLPLRKHGCGRGPVQICSEEEFLKDVMEFLILRGYSRLIPRGGITEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMCNYTSTNRMTGVGNTLKRHYETYLLEYEFAHDDVDGECCLLCHSSAGGDWVNCGICGEWAHFGCDRRHGLGAFKDYAKTDGLDYICLHCSVTNFKKQSVANVYSQRSMSSQPL* 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0864 779 ProSiteProfiles ARID domain profile. 594 698 IPR001606 GO:0003677
Lan2g0864 779 CDD PHD_ARID4_like 704 755 - -
Lan2g0864 779 MobiDBLite consensus disorder prediction 437 473 - -
Lan2g0864 779 Pfam ARID/BRIGHT DNA binding domain 597 694 IPR001606 GO:0003677
Lan2g0864 779 SUPERFAMILY ARID-like 595 709 IPR036431 GO:0003677
Lan2g0864 779 SUPERFAMILY FYVE/PHD zinc finger 691 758 IPR011011 -
Lan2g0864 779 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 5 765 - -
Lan2g0864 779 SMART ARID_2 591 694 - -
Lan2g0864 779 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 5 765 IPR042293 -
Lan2g0864 779 CDD ARID 596 694 - -
Lan2g0864 779 Gene3D - 588 704 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0864 Lan-Chr2 18960960 18973605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0864 4 764 ARID Transcription Factor Family AT3G43240 58.409 0.0 891
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lan2g0864 ARID 5.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0864 - - gmx:100816540 1305.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g1039 9 17614646 17623132 Lan2g0864 2 18960960 18973605 LSH