Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0862 ATGGAATCCTCTTCCAAAGCAAAGATTGGAACAAAGCCAACCACCACAAAAGGCAGGAAAAGAAAGTTTGAGATCAAAAATGTTGAGCACAACAACAAGGATGACGTAACCTTCTCCAAACACAAACTAGGGCTTTTCAACAAAGTCACTGAGCTTTCCATTCTATGCCAAGCTGAAACTGCATTGATCATTTCCTCTCAACAAGGCAAGCTCTATGTTTGTGGCTGCCCTGATCCCGATGCTGTCATCCGCCGTATTCTCAATGACGGTTCTCTTGTGCAAAGCTGCCATGCCGGTAAAAAGACGCATCAAGAATTGGTTGAAACCATGAATCTTGAATATGAGGCTACTCATGATAGGTTGAAAGAAGAGAAGAAGAGTTTGGCTGAGATCCAAGAAACACGTAAGGGTCGTTTGGATTTTCCTCCTTGGTGGAATCAAGATATTGAAAAGATGGGTTTGGAGGATCTTGAGCATTTCACTGCTTCCTTGGAGACATTGAAGCTAAACCTTGTTGCTACATTAGAAGCAAAGAAGCTCAATTCTCAAAGGCTGATGTATTCAAATTTGCCACCCGTGAATGGGTGTTTCAGTGGAGATCGTCAAGTTTGGAATTTGATGAATGGTTGCAGCAGTAGCAGAAACCCAATGGTTCCTAATCTTGGGTTTGTCTTCTCATTTATGCTCTTGAGAGAAAAAGTTATTGAAGATCAATTGCAGTTTAATCGTGAGATTGAGCTATCAATCAAGAGCAATATGAAGAAAGCAAAAGACAAGAAGAAGCAGAGTACTCATGAGGCACAATCTAGTTATCAACAGACAACAACCTCAGAACCTCAATCTAAAAAAATGGATAATGCAAATGCTGCAACTAGAAACAATGAGAGACCTATTCCTCCAAGAAGGACATGA 912 0.4079 MESSSKAKIGTKPTTTKGRKRKFEIKNVEHNNKDDVTFSKHKLGLFNKVTELSILCQAETALIISSQQGKLYVCGCPDPDAVIRRILNDGSLVQSCHAGKKTHQELVETMNLEYEATHDRLKEEKKSLAEIQETRKGRLDFPPWWNQDIEKMGLEDLEHFTASLETLKLNLVATLEAKKLNSQRLMYSNLPPVNGCFSGDRQVWNLMNGCSSSRNPMVPNLGFVFSFMLLREKVIEDQLQFNREIELSIKSNMKKAKDKKKQSTHEAQSSYQQTTTSEPQSKKMDNANAATRNNERPIPPRRT* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0862 303 PRINTS MADS domain signature 20 40 IPR002100 GO:0003677|GO:0046983
Lan2g0862 303 PRINTS MADS domain signature 40 55 IPR002100 GO:0003677|GO:0046983
Lan2g0862 303 PRINTS MADS domain signature 55 76 IPR002100 GO:0003677|GO:0046983
Lan2g0862 303 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 10 185 - -
Lan2g0862 303 MobiDBLite consensus disorder prediction 1 20 - -
Lan2g0862 303 PANTHER MADS BOX PROTEIN 10 185 - -
Lan2g0862 303 SUPERFAMILY SRF-like 19 88 IPR036879 GO:0003677|GO:0046983
Lan2g0862 303 SMART madsneu2 18 77 IPR002100 GO:0003677|GO:0046983
Lan2g0862 303 Coils Coil 111 134 - -
Lan2g0862 303 Gene3D - 36 117 IPR036879 GO:0003677|GO:0046983
Lan2g0862 303 MobiDBLite consensus disorder prediction 254 303 - -
Lan2g0862 303 ProSiteProfiles MADS-box domain profile. 18 78 IPR002100 GO:0003677|GO:0046983
Lan2g0862 303 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 28 73 IPR002100 GO:0003677|GO:0046983
Lan2g0862 303 MobiDBLite consensus disorder prediction 266 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0862 Lan-Chr2 18925291 18940058 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0862 16 191 Type I MADS-box Gene Family AT5G60440 32.222 6.72e-21 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lan2g0862 SRF-TF 8.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0862 - - lang:109327877 581.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0582 11 4636567 4637280 Lan2g0862 2 18925291 18940058 LSH
Lan9g1042 9 17643950 17644764 Lan2g0862 2 18925291 18940058 LSH