Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0854 ATGCCTTTCTCAAGTGACAATTTTTTGAATCAACAGCCTAAGCTCCACACTGTGCAGACCTTTATTCAGCCTGAAAATCAACCAAATCCTGTGCCACTGATTCATTCATCAAACTTCAGATATGATCATGAAGAAATACAGACTATGGTTGTATCAAAAAGCTTAGGGAATGCTTCTCCTCCATATACTACAAATGCTTGTGCTGAAAAGAATAAGAATCTAGTTGGAAACAAAAGGAAGAGAAACAATAACAAAGCCATTCATGTCAGAGCAAAAAGAGGCCAAGCAACTGATAGCCACAGTTTATCAGAAAGGGTGAGAAGAGAGAAAATCAATGAGAAACTGAGATATTTGCAGGACTTGGTTCCAGGGTGCTATAAGGCAATGGGAATGGCAGTTATGTTAGATGTGATAATAGAATATGTTCATTCACTACAGCAGCAAATTGAGTTTCTATCCATGAAGCTTTCTGCAGCAAGCATATCTTTCGATTTCAACACTTCCGATATGGATGCCACAAAAACCATGCAGCAGAGAAGTGCTAGTAGACATGAAATCCAAGAGATGGAAACAACAGCAGGAGAAGTTTATGGTGGGTTCTGCTATTTCAACCCAGCATGGCCACTTTATTGA 633 0.3918 MPFSSDNFLNQQPKLHTVQTFIQPENQPNPVPLIHSSNFRYDHEEIQTMVVSKSLGNASPPYTTNACAEKNKNLVGNKRKRNNNKAIHVRAKRGQATDSHSLSERVRREKINEKLRYLQDLVPGCYKAMGMAVMLDVIIEYVHSLQQQIEFLSMKLSAASISFDFNTSDMDATKTMQQRSASRHEIQEMETTAGEVYGGFCYFNPAWPLY* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0854 210 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 93 160 IPR036638 GO:0046983
Lan2g0854 210 PANTHER TRANSCRIPTION FACTOR BHLH75 52 195 - -
Lan2g0854 210 Gene3D - 91 163 IPR036638 GO:0046983
Lan2g0854 210 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 52 195 IPR024097 GO:0006355
Lan2g0854 210 Pfam Helix-loop-helix DNA-binding domain 99 131 IPR011598 GO:0046983
Lan2g0854 210 SMART finulus 101 151 IPR011598 GO:0046983
Lan2g0854 210 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 95 145 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0854 Lan-Chr2 18813362 18815505 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0854 87 198 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G25330 68.750 4.88e-48 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan2g0854 HLH 3.6e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0854 - - aprc:113869931 270.011