Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0844 ATGCCGGAAATCTGGAACCAACAACCTAAAGAGAGGAAGACTGTATTTAAGAAACAGAAGCACAATGCAAACTCATTTGAAGGCACTAAAATGCAGAGAAAGTTGCGCATAATTTGGCATGATCCTGATGCTACTGACTCTTCTTCAGATGAAGAAGGGGATCACGAAATGCGTCGAAAGAATAAGAGAACTGTGCTTCAGGTTGCTCTTCCGCCTTTTCCTCCTAACTCAGTCACTACTGATACTAGCACTGAGAGCTTTAGCAATACTGAATTGAACAAGAAAATGGTTTTAGTGAAAACCCCACCCGTGAAGAGGAAAACTGCTGGCAAATACCGAGGTGTTCGGATGAGGAAATGGGGCAAATGGGCTGCTGAAATTCGCGATCCTTTCAAAGGTACACGGCTCTGGTTAGGAACTTACAACACTGCAGAGGATGCTTCCCAAGCTTATGAGAAGAAAAAGCTTGAATTTGAGGCTATGACTAAGGCTTTGTCTGGTGAAAAGAGCAACAATAACATTGCTGATGTTGTTGTTTGTGTTTCTACTGAAGCTATGGCTGCTCAAGAGAAGAGCAGCATTAACTGCAGTGTTTCTTCTGGCGCAGCTTCTGTGTCAGAATCAAAGTCCGCTGCTACTTTGGATGACTCAGAGTGTGTGTTATCTCATGCATCGCCCTCGTCCGTGCTCGAATTGGATACCTCAACACCCAAGGCTTCAAATTTGGTGGAGAATGGAAAGATCTCGAACAATGAAGGTGTTGAGAAGAATACTTTAGAGGCTGAATTTGCTGAGATGATCTGTAAAGTTGATGAAGTTGTTGAGATGACTGATTTGGAGGCTGAATTGGCAGACCTGGAAATGCCAGATTTTAGTATTTTGAATGTGCCACTACCATCTACTGGTGCTGATGCTCCATTCGCATTTGAGTTTGATTGGTTAACATTCGATGGTTTTGATGATGATCTTGGTGGCCTGGAGAACATTCACATTGGTGGAATTGGCGAAGATGGGCCTAGTGCACTTCCTGATTTCGATTTCGGTGACTTTAGTGATGATGAGTTTGCTGATTGGATTGAAGAACCCCTCAATATACCTTGCATATAA 1107 0.4309 MPEIWNQQPKERKTVFKKQKHNANSFEGTKMQRKLRIIWHDPDATDSSSDEEGDHEMRRKNKRTVLQVALPPFPPNSVTTDTSTESFSNTELNKKMVLVKTPPVKRKTAGKYRGVRMRKWGKWAAEIRDPFKGTRLWLGTYNTAEDASQAYEKKKLEFEAMTKALSGEKSNNNIADVVVCVSTEAMAAQEKSSINCSVSSGAASVSESKSAATLDDSECVLSHASPSSVLELDTSTPKASNLVENGKISNNEGVEKNTLEAEFAEMICKVDEVVEMTDLEAELADLEMPDFSILNVPLPSTGADAPFAFEFDWLTFDGFDDDLGGLENIHIGGIGEDGPSALPDFDFGDFSDDEFADWIEEPLNIPCI* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0844 368 Pfam AP2 domain 111 160 IPR001471 GO:0003700|GO:0006355
Lan2g0844 368 SMART rav1_2 111 175 IPR001471 GO:0003700|GO:0006355
Lan2g0844 368 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 13 268 - -
Lan2g0844 368 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 270 367 - -
Lan2g0844 368 SUPERFAMILY DNA-binding domain 111 158 IPR016177 GO:0003677
Lan2g0844 368 PRINTS Ethylene responsive element binding protein signature 112 123 IPR001471 GO:0003700|GO:0006355
Lan2g0844 368 PRINTS Ethylene responsive element binding protein signature 134 150 IPR001471 GO:0003700|GO:0006355
Lan2g0844 368 ProSiteProfiles AP2/ERF domain profile. 111 168 IPR001471 GO:0003700|GO:0006355
Lan2g0844 368 MobiDBLite consensus disorder prediction 33 59 - -
Lan2g0844 368 MobiDBLite consensus disorder prediction 1 59 - -
Lan2g0844 368 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF119 13 268 - -
Lan2g0844 368 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF119 270 367 - -
Lan2g0844 368 Gene3D AP2/ERF domain 110 166 IPR036955 GO:0003700|GO:0006355
Lan2g0844 368 MobiDBLite consensus disorder prediction 10 24 - -
Lan2g0844 368 CDD AP2 111 158 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0844 Lan-Chr2 18620088 18622482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0844 17 367 AP2-EREBP Transcription Factor Family AT1G68550 32.964 6.60e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lan2g0844 AP2 9.7e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0844 - - gmx:102667919 363.229