Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0824 ATGAAAAGGGAAGAAGATCAAGGGCATTATTCTTCTCAAGCTATCAATAATAACAACTTTCAAAGCTACCAAGAACAAATACTCCTTCAACAACAACAACAGATGCTTCATCATCAACAACAAAACAGTGATATGAATAATATCTTTGGAGGAGGGAGAGGGTTCACGATCCCTCATGAAGTTTCTCAGTGGTCTATACCACAGGTTCACTCCTTCAACCCAAACCAGGTTCGTGAACATGACCAGTTTCTTGTTCCTCCTCCCCCAATGCCATCACCATACTCAAGCTTCTTCAATAGAAGGGTTCCTTCTCTGCAGTTTGCATATCATGAGGTTCCTTCTGATCATCTTAGAATGTTGTCTGATACACTTGGACCAATGGTTCAACCTGGTTCAGTTCCCTTTGGACTCCATGCTGAGTTGGGAAAGATGAATGCTCAAGAAATCATGGATGCTAAGGCTCTTGCACAGTCTAAGAGTCACAGTGAAGCGGAAAGAAGACGCAGAGAGAGAATCAATAACCATCTTGCTAAACTTCGCAGCCTCTTGCCAAACACAACCAAAACAGATAAAGCTTCATTGCTTGCAGAAGTGATTCAGCATGTGAAAGAACTGAAACGTCAAACTTCACTGATTGAAGAAACAAGTCCAGTGCCAACTGAATCTGACGAGTTAACAGTGGACACAGCGGATGAAAATGGCAAGTTTGTGATCAAAGCCTCACTATGCTGTGAAGATAGGTCAGATCTGTTACCTGATCTCATAAAAACCTTGAAATCATTAAGGTTAAGAACCCTAAAAGCTGAGATCACAACACTTGGTGGGAGAGTGAAGAATGTGCTTTTCATCACTGGTGATAATGAGGATTCAAGTAGCAGTGGAGAACAATGCATGCAGCAGCAACAACAATATTGTATTAGTTCTATACAAGAAGCACTTAAGGCTGTGATGGAGAAAAATGGTGGAGAGGAATCTGCTTCTGGGAATGTTAAGAGACAAAGGACTAATAATATCAATATCCTTGAACAAAGGTCTTCATGA 1041 0.4102 MKREEDQGHYSSQAINNNNFQSYQEQILLQQQQQMLHHQQQNSDMNNIFGGGRGFTIPHEVSQWSIPQVHSFNPNQVREHDQFLVPPPPMPSPYSSFFNRRVPSLQFAYHEVPSDHLRMLSDTLGPMVQPGSVPFGLHAELGKMNAQEIMDAKALAQSKSHSEAERRRRERINNHLAKLRSLLPNTTKTDKASLLAEVIQHVKELKRQTSLIEETSPVPTESDELTVDTADENGKFVIKASLCCEDRSDLLPDLIKTLKSLRLRTLKAEITTLGGRVKNVLFITGDNEDSSSSGEQCMQQQQQYCISSIQEALKAVMEKNGGEESASGNVKRQRTNNINILEQRSS* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0824 346 MobiDBLite consensus disorder prediction 326 346 - -
Lan2g0824 346 MobiDBLite consensus disorder prediction 319 346 - -
Lan2g0824 346 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 159 214 IPR036638 GO:0046983
Lan2g0824 346 Gene3D - 151 214 IPR036638 GO:0046983
Lan2g0824 346 Pfam Helix-loop-helix DNA-binding domain 159 205 IPR011598 GO:0046983
Lan2g0824 346 SMART finulus 162 211 IPR011598 GO:0046983
Lan2g0824 346 PANTHER TRANSCRIPTION FACTOR BHLH30 71 342 IPR045847 GO:0003700|GO:0006355
Lan2g0824 346 PANTHER TRANSCRIPTION FACTOR BHLH30 71 342 - -
Lan2g0824 346 CDD bHLH_AtAIG1_like 151 228 - -
Lan2g0824 346 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 156 205 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0824 Lan-Chr2 18161003 18163943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0824 11 344 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 56.630 1.52e-108 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan2g0824 HLH 2.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0824 - - qsu:112015145 437.187