Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0778 ATGAGTGAAAAGGAAAAGTTAGAGCTTGATAGAAACCAGGATCCTATGAGTTATTCAAGTGCTATGAACTTGGATTGGAGATTTGGAGGTGCCGATCTTCCAAATTCGTCTGTGGGTTTGATTGCCATGGGGAATTCTATGAATGTTAGCAGAGGGGATCTTATTGGTTCTTCTTCATGTTCCTCTGCCTTGGTGGTGGATTCATTCGGTCCAAACTTTTGGGACCACACACCCAATTCCCAAAACATCGGATTTGGTGACATTAATAACGTCCGTAACAATGGGAGCTCTTCACACAGAATTGGATTTGGAAGAAGTGGTCATGATCATGGAGCACTTGAAATGGGTTGGAACCCGGCTAACCCTTTGTTGAAGGGGGATGGTTTTATACCAATGGGACGGGGGGTGTTTCCACAGAGTTTATCTCAGTTTCCAACTGACTCTGGATTTATTGAGCGGGCTGCGAGGTTCTCTTGCTTCGGTGGAGGTAATTTTGGTGAAATGGTGAACTCATATGGGGCTCCTCAATCCATTAGTCTGTATGCTGGGCCTGGTACAATGCATGGAACAAGAAATGCTCTTGCAGGCCATGGATTAAAACCAGCCCCTGGAGAACAATCTCAAGAAACCGATCTGAATGTGGTTGAAGCTGCAAAAGATGTGTCTCCATGTGTCGAGCATCTGGCTACTAAAGGAAGTCCACTGAAGAATGATAAAAGAAGTGAAAGTTGTGGTATAACTCACGATGAAAGGAAACAAGCTCTTGTTAGGCCTGCTAATGAGTCTGATAGAGCTGAATCTAATGATGACGATGGTGGTGGCCAGGATGATTCCACAATGTTGGAGGGTACTAGCGGGGAACCTTCTAATAAAGGACCGAACTCAAAGAAAAGGAAAAGAAGTGGGCAGGACGCCGATAATGATAAGGGAAATGGAGCTACAGAACTGGCTGGTGAGGGTGCGAACGACAACTCCGAGAGTCCACAGAAGGGAGACCAACAACCAACTTCAGCAACCAAGGCTTCTGGGAAGAATGCCAAAGAAGGTTCTGAAGCTTCTGGTCCACCTAAGGAGGAATTCATACATGTTCGGGCTCGCCGGGGTCAAGCAACAAATAGCCACAGCCTTGCAGAGAGAGTGAGGAGAGAAAAGATAAGTGAGAGGATGAAGTTACTTCAAGATCTTGTACCTGGATGCAACAAGGTCACTGGCAAGGCAGTGATGTTAGATGAAATCATTAACTATGTACAGTCACTTCAACGGCAGGTTGAGTTTTTGTCGATGAAACTTGCAACAGTAAATCCACGGCTGGATTTTAATGTTGAAGGACTTCTTGCCAAAGATATTCTTCACCAGCGGCCTGGTCCTTCATCTGCCCTGAGGTTTCCTCTAGAAATGTCTATGGCTTACCCTCAATTACATCCATCTCAACCAGGACTGATTCAGTCAACTCTTCCTAGCATGGCAAACACATCTGATATTTTTTGTAGAAACATTCACCCACAGATGGTACCCTCGAGTGGAGGGTTCAAAGAGCCAAATCAGCTGACTGATGCATGGGAGGATGAGCTTCACAATGTTGTACAGATGAGCTACGCACCAACTATACCCCTGAACAACCAAGATGTGGATGGTAATGTGGCAGCAAATCAGATGAAAGTTGAACTTTGA 1671 0.453 MSEKEKLELDRNQDPMSYSSAMNLDWRFGGADLPNSSVGLIAMGNSMNVSRGDLIGSSSCSSALVVDSFGPNFWDHTPNSQNIGFGDINNVRNNGSSSHRIGFGRSGHDHGALEMGWNPANPLLKGDGFIPMGRGVFPQSLSQFPTDSGFIERAARFSCFGGGNFGEMVNSYGAPQSISLYAGPGTMHGTRNALAGHGLKPAPGEQSQETDLNVVEAAKDVSPCVEHLATKGSPLKNDKRSESCGITHDERKQALVRPANESDRAESNDDDGGGQDDSTMLEGTSGEPSNKGPNSKKRKRSGQDADNDKGNGATELAGEGANDNSESPQKGDQQPTSATKASGKNAKEGSEASGPPKEEFIHVRARRGQATNSHSLAERVRREKISERMKLLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNVEGLLAKDILHQRPGPSSALRFPLEMSMAYPQLHPSQPGLIQSTLPSMANTSDIFCRNIHPQMVPSSGGFKEPNQLTDAWEDELHNVVQMSYAPTIPLNNQDVDGNVAANQMKVEL* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0778 556 MobiDBLite consensus disorder prediction 230 357 - -
Lan2g0778 556 MobiDBLite consensus disorder prediction 318 346 - -
Lan2g0778 556 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 369 419 IPR011598 GO:0046983
Lan2g0778 556 Pfam Helix-loop-helix DNA-binding domain 372 420 IPR011598 GO:0046983
Lan2g0778 556 MobiDBLite consensus disorder prediction 292 306 - -
Lan2g0778 556 Gene3D - 366 439 IPR036638 GO:0046983
Lan2g0778 556 MobiDBLite consensus disorder prediction 232 271 - -
Lan2g0778 556 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 367 438 IPR036638 GO:0046983
Lan2g0778 556 Coils Coil 549 556 - -
Lan2g0778 556 CDD bHLH_AtBPE_like 359 444 - -
Lan2g0778 556 SMART finulus 375 425 IPR011598 GO:0046983
Lan2g0778 556 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 10 555 IPR024097 GO:0006355
Lan2g0778 556 PANTHER BHLH TRANSCRIPTION FACTOR 10 555 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0778 Lan-Chr2 16497933 16502182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0778 56 532 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 46.266 1.35e-114 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan2g0778 HLH 2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0778 - - lang:109340340 890.182