Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0633 ATGTCCACCGTCGATTCCTTCTCCGACCACAAACTCTGCGGTTACCTCTGTGCTGTTCTCACTGTCACTCCTTCTCAATCCGACCCTTCCACCATTCCACTTTTCAACGAATCATGCGAAATCTTAAGCGGAAACGGCGCCGAAGTCGGGTTCCGGTCCCAAAACGGCATCGTTTTATCTCCGGTAGATTCATCGTTACCGAATCCAACCACTGATTCGGAACAATGTGATGACTCCGGTGGGACCAGTTCGAAGCATAACGGCTGCACGGTCATGCCGTCGAGCTCAAGGGTTAGGAAGATGAGGAAGTTTGGGATGGTGAATGGAAGTATGAGTGTGATTCATCAGATTCATGCTTTGGTTAGTTGTAATTGCTTGAAGATTGATGCTCGAGTGGTGCGGGTTGAGGCGAGGGAGTGTGATACCGGAGAGGCGAGGGCTGTCGTGCTCATTGATGTGTACCTTCCTGTTGACCTCTGGAGTGGCTGGCAGTTCCCCAAGTTGAAGTCTATCGCCGGTGCTATTTTTCGCCATTTGAGCTGTGATTGGAATGAGAGAAATTCAATGCTTTCTTGTCCAGACTATTTGAAGAGGACTCATGAAGCAAATGAGAGCATTTGGAACCTTTCTGACTGTCATGTAATTGGGTGCAAGCTCCATTACCATGTGAGTGATTCTTCTAAGAAAAGGCTATTTGGACTTCATGAAATATTTAAGACAGTACCTGGTGTAGGAAAGCAGCAGAAGTCTAACAGTTCCAGGATAATACCTAGGGATTACACTTGTACCTCTGGTATTTGGGAGATACCTGATGACATTTTAACTAAAATTCTAGCTTCCCTGCACCCCCTGGACCTTACTAGGGTTTCTGAAACGTGTCACCATTTTAGATCCCTGGCTGCCTCGGTAATGCCTTGTACCAAGTTAAATCTGTTTCCACATCAGCAGGCAGCAGTTGAATGGATGTTGCACCGTGAGCGAAATGCTGAATTCTTGCGACATCCTTTATATGTGTCTCTCTCAAGTGTTGATGGCTTCAGTTTCCATGTAAATACTGTATCTGGTGAAATAGTCACTGGGGAAGCTCCCACCATCAAAGATTTTCGTGGAGGAATGTTTTGTGACGAGCCCGGCTTGGGTAAGACGGTAACTGCTCTTTCCCTTATTGTTAAGACACAAGGTACATTAGCAGACCCACCAGATGGGGCGCAAGTAATCTGGTGTCAACATAATGGTAACCAGAAATGTGGCTATTATGAGGTCAGTGGTATTAACTTTACGAGTTGTAGTAAGTTGGGCAAGAGGGATGTGTGCCAAGATGTTAGTAGAAATAAGGAGAACCATGATCATTCTTCCAAAAGAGCCAGACTGCTGGGTCCCGCTGAGCAACGCACTAAACTTCATGATTCATGTTCTGTGCAAGAACAAAAATCACCTGTAGATGCATGTTCTGAGGAATCTATGCCTGCAAGTCGAAGCACAAGGAGCTTGAGTCGCATAAAGAAAAACCTACATTTATCTTATGAAGAAGAAGCACTGTTTTCCAAGGAAAGAAAAGTTGGTGAAAGTTCAATTCAAACAAAGCATACATCAGGTGTTACATCACGTGTATCTCAGAACAAGCTAGTTGATACTTCACATGGATGTGGAAAGAGTTACAAGCGGCCTGGGAAGTCTAAAATCGATTTTTTAGAGTACAATGATACTTGGATTCAGTGTGATTCTTGTCACAAGTGGCGAAAGCTTGCCGACAACAGTATGGCTAATTCTAGTGCAGCATGGTTTTGTAGTATGAATACTGATCCTTTTTATCAGAGTTGTAGTGTCCCAGAACAATGTTTCCAGAATAGCTCCAAGATAACTTACATGCCAGGATTTCACTTGAAAGGAACTCCAGGGGGTGACAAACAAAATGTTTCATTTTTTATTGATGTGCTTAAGGAGCACTACTCTTTGATAAATTCTGAGACAAAGAAGGCCCTGACTTGGTTGGCTAAAATCTCAACTGAAAAGCTTGCAGGAATGGAAACAAATGGCATAAGGGGTCCTATTTTAAACACCACATCATGTAATGTGTTCCACAAAATATTTCAAGCATTTGGCTTCATAAAGAGGGTAGAGAAAGGCGTATGCAGGTGGTACTACCCACAAAATCTTAACAATTTGACTTTTGATGTGGCTGCCCTTGGCATGGCTCTCCGAGAGCCATTAGATTTTTTTCGGTTGTACTTGTCAAGAGCAACCCTGGTAGTTGTTCCAGCGAACTTGGTTGATCATTGGAAAACACAAATATTAAAGCATGTCAGGCCTGGTCAATTACGGGTTTATATTTGTATTGATCATCGGAAGCCATCTGCACATTGTCTGGCTTGGGATTATGATATCGTCATCACTACATTTAGTCGTCTGAGTGCAGAGTGGGGTCCACGTAAGAGGAGTGTCTTGATGCAAGTGCATTGGTTTAGGATAATTTTAGATGAAGGTCACACTCTTGGTTCAAGCCTAAACTTAACAAACAAGTTACAAATGGCTATTTCATTGATGGCTTCAAATCGTTGGATACTAACAGGAACTCCAACACCGAACACTCCTAATAGCCAACTCTCACATCTACAACCATTGCTAAGGTTCCTTCATGAAGAAGCTTATGGACTGAATCACAAGTCATGGGAAGCTGGTGTTCTTAAGCCATTTGAGGCAGAGATGGAAGAAGGAAGGTCTCATTTGTTGCATATACTTCACAAATGCATGATTAGTGCAAGAAAAATAGATTTGCAAAGCATTCCACCATGCATCAAGAAAGTTGTTTTTCTAGATTTTAATGAGGAGCATGCTCGAAGTTACAATGAGTTAGTACTCACAGTTCGGCGTAATATACTGATGGCTGATTGGAATGATCCTTCACATGTTGAGAGTCTACTGAATCCAAAACAGTGGAAATTTCGTAGTGCAACTATTAACAATGTCAGGCTCTCATGCTGTGTTGCTGGACATATTAAAGTTACACATGCTGGAGAAGATATTCAGGAAACAATGGATATGTTAGTTCAGAGTGGTCTAGATCCTACTTCAGGGGAGTATACCTCCATACGATATAGTCTTCTGTTTGGTGGTTACTGTGTCAGGTGCAAGGAATGGTGCCGTCTTCCTCTCATTACACCATGTCGGCATTTATTGTGCCTTGATTGTGTTTCTATAGACAATATGAAGTGTACATATCCTGGCTGTGGTAAATTATATGAGATGCAGAGTCCTGATACACTAGCCCGACAAGAAAATCCTAACCCAAAGTGGCCTGTACCCAAAGATCTTATTGAGCTACAACCTTCATATAAGCAGGACAATTGGGATCCTGATTGGCAATCAACATCTAGTAGTAAAGTCTCCTATCTTATACAGAGGCTGAAAGCTTTGCAAGAAACCAACAAAGAATTGAGTTTCTATGAAGATCACATCAATTATGAGATGGATACTACGAATAATGTGCCTTTTCATAATAGACATAGCAAATCATTCCAGGAATCTTCTGTAAGAAGCCAGTCCAATACAAACCCTGAGAAAGTTCTTATATTTTCTCAATTTCTTGAGCATATACACGTCATTGAACAACAGTTGACTATTGCTCGTATCAAATATGCTGGAATGTATAGCCCAATGCATTCCTGCAACAAGAAGAAGTCATTAGCCATGTTCCAGAATGATTCAAGTTGCATGGCGCTTGTGATGGATGGAAGTGCTGCATTGGGTCTTGACTTGAGTTTTGTTACACATGTATTTTTAATGGAGCCAATTTGGGACAGAAGTATGGAGGAGCAAGTAATTAGTCGTGCCCATCGCATGGGTGCTTCTCGTCCTATTCAAGTGGAAACATTAGCGATGCGTGGTACAATTGAAGAGCAAATGCTAGAATTTTTTCAGGATGCTGATGAATGTAGAAGTTTTCCATGTAAAGATGTTACCAAATCTGAAGTTGACATTGGGGGACGATTATATCGATCATTGCATGATTTTGCTGAAAGCAGTTATCTACTGAAACTTAGATTTGTGTATACTAGTTCTGACAATCAGGAAGGTGTTTGA 4080 0.4186 MSTVDSFSDHKLCGYLCAVLTVTPSQSDPSTIPLFNESCEILSGNGAEVGFRSQNGIVLSPVDSSLPNPTTDSEQCDDSGGTSSKHNGCTVMPSSSRVRKMRKFGMVNGSMSVIHQIHALVSCNCLKIDARVVRVEARECDTGEARAVVLIDVYLPVDLWSGWQFPKLKSIAGAIFRHLSCDWNERNSMLSCPDYLKRTHEANESIWNLSDCHVIGCKLHYHVSDSSKKRLFGLHEIFKTVPGVGKQQKSNSSRIIPRDYTCTSGIWEIPDDILTKILASLHPLDLTRVSETCHHFRSLAASVMPCTKLNLFPHQQAAVEWMLHRERNAEFLRHPLYVSLSSVDGFSFHVNTVSGEIVTGEAPTIKDFRGGMFCDEPGLGKTVTALSLIVKTQGTLADPPDGAQVIWCQHNGNQKCGYYEVSGINFTSCSKLGKRDVCQDVSRNKENHDHSSKRARLLGPAEQRTKLHDSCSVQEQKSPVDACSEESMPASRSTRSLSRIKKNLHLSYEEEALFSKERKVGESSIQTKHTSGVTSRVSQNKLVDTSHGCGKSYKRPGKSKIDFLEYNDTWIQCDSCHKWRKLADNSMANSSAAWFCSMNTDPFYQSCSVPEQCFQNSSKITYMPGFHLKGTPGGDKQNVSFFIDVLKEHYSLINSETKKALTWLAKISTEKLAGMETNGIRGPILNTTSCNVFHKIFQAFGFIKRVEKGVCRWYYPQNLNNLTFDVAALGMALREPLDFFRLYLSRATLVVVPANLVDHWKTQILKHVRPGQLRVYICIDHRKPSAHCLAWDYDIVITTFSRLSAEWGPRKRSVLMQVHWFRIILDEGHTLGSSLNLTNKLQMAISLMASNRWILTGTPTPNTPNSQLSHLQPLLRFLHEEAYGLNHKSWEAGVLKPFEAEMEEGRSHLLHILHKCMISARKIDLQSIPPCIKKVVFLDFNEEHARSYNELVLTVRRNILMADWNDPSHVESLLNPKQWKFRSATINNVRLSCCVAGHIKVTHAGEDIQETMDMLVQSGLDPTSGEYTSIRYSLLFGGYCVRCKEWCRLPLITPCRHLLCLDCVSIDNMKCTYPGCGKLYEMQSPDTLARQENPNPKWPVPKDLIELQPSYKQDNWDPDWQSTSSSKVSYLIQRLKALQETNKELSFYEDHINYEMDTTNNVPFHNRHSKSFQESSVRSQSNTNPEKVLIFSQFLEHIHVIEQQLTIARIKYAGMYSPMHSCNKKKSLAMFQNDSSCMALVMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGASRPIQVETLAMRGTIEEQMLEFFQDADECRSFPCKDVTKSEVDIGGRLYRSLHDFAESSYLLKLRFVYTSSDNQEGV* 1360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0633 1359 Gene3D - 1082 1311 IPR027417 -
Lan2g0633 1359 CDD SF2_C_SNF 1184 1291 - -
Lan2g0633 1359 MobiDBLite consensus disorder prediction 62 89 - -
Lan2g0633 1359 MobiDBLite consensus disorder prediction 442 471 - -
Lan2g0633 1359 Gene3D - 564 617 - -
Lan2g0633 1359 ProSiteProfiles Zinc finger CW-type profile. 564 615 IPR011124 GO:0008270
Lan2g0633 1359 SMART ultradead3 307 888 IPR014001 -
Lan2g0633 1359 SMART helicmild6 1199 1281 IPR001650 -
Lan2g0633 1359 MobiDBLite consensus disorder prediction 442 496 - -
Lan2g0633 1359 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1171 1320 IPR001650 -
Lan2g0633 1359 SUPERFAMILY F-box domain 260 302 IPR036047 GO:0005515
Lan2g0633 1359 ProSiteProfiles F-box domain profile. 263 315 IPR001810 GO:0005515
Lan2g0633 1359 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 748 877 IPR014001 -
Lan2g0633 1359 MobiDBLite consensus disorder prediction 472 496 - -
Lan2g0633 1359 SMART fbox_2 269 309 IPR001810 GO:0005515
Lan2g0633 1359 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 819 1308 IPR027417 -
Lan2g0633 1359 Pfam CW-type Zinc Finger 569 612 IPR011124 GO:0008270
Lan2g0633 1359 PANTHER OS01G0952200 PROTEIN 47 1340 - -
Lan2g0633 1359 ProSitePatterns Zinc finger RING-type signature. 1055 1064 IPR017907 -
Lan2g0633 1359 Gene3D - 726 921 IPR038718 -
Lan2g0633 1359 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 47 1340 - -
Lan2g0633 1359 CDD DEXDc_SHPRH-like 741 918 - -
Lan2g0633 1359 Pfam Helicase conserved C-terminal domain 1181 1281 IPR001650 -
Lan2g0633 1359 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 745 905 IPR027417 -
Lan2g0633 1359 Pfam SNF2-related domain 314 975 IPR000330 GO:0005524|GO:0140658
Lan2g0633 1359 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 301 392 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0633 Lan-Chr2 11069534 11078972 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0633 747 1301 RAD5 or RAD16-like Gene Family AT5G22750 24.831 4.09e-40 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lan2g0633 SNF2_N 1.1e-94 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0633 - - gmx:100803102 2107.41