Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0629 ATGGATGAAGAATCTGTGGGAAGTGAAGAATTACCTGTTTTCAGTGACATTAGACGCTATTACTGCCAATACTGTGGTATCTGTAGATCCAAAAAGACACTAATCACCTCCCATATCAATTTGCACCACAAGGATATGGAAGATGCAAAAGATGAAAAAGATAATGATGGTGGTGATGGTTTAAAATCTAACAATACTTGTGAGGAATGTGGTGCTAGTTTCAAAAAACATGCTTACTTGTTGCAGCATATGCAAAGTCATTTGGTTGAGCATTGGATCCCAGAAAAAGAACTCCAAAATGCACGAGGCAGGATGATTGGACTTGATGGATCAGTATCAGGTAGGGAGACCTCCTGTGAAGCTCCATCAAGAATGCCTCAGTCACGCTCTGTTCAAAATGAGAGGCCATATGTGTGTACTTTTGATAATTGTCAAGCAAGTTATAGACGAAAGGACCACTTAACTCGACACCTTGCACAGCATGAAGGGAAAACTTTTAAATGCCCAATTCAGAATTGCAACCTCCTTTTCTCATTACAAAGTAATATGAAAAGACATGTCAAGGAAATGCATAATGAGAGTTCTACCTCCACCAGTGCTGAAGGTCAGAAGCAATATGTCTGCCCAGAAGTTGGCTGTGGAAAAGTTTTCAAATATGCATCAAAGCTACGAAAGCATGAAGATTCTCATGTTAAGTTGGAGTCAGTAGAGGTATTGTGCTTAGAACCTGGTTGCATGAAGCATTTCACTAATCCCAAGTGCCTTAAAGAACATATAAATTCCTGCCATCTTTACACAACCTGTGACATTTGTGGGACTGAGCAACTGAAGAAAAATATGAAGCGGCACCTCAGAATGCATGAGGCTGACAATTCTTCGGAGGTGTTTAAATGTGTTCAAAAGGATTGTGACTGCTCATTCTCAAGTAAGTCTAATCTCCACAAGCATGAGAAGGCTGTGCACTTCAAAGACAAACCCTATGTGTGTGGCTTCTCTGATTGTGGAATGAGATTTGCTTACAAACATGTGAGAGACAAACATGAAAAAACTGGGAAACATGTTTTCACCCTTGGTGATTTTGAAGAAGCTGATGCAGAATTCAGGTCAAGGCCAAGAGGTGGGAGGAAGAGAGTTTGTCCTTCAGTTGAAATGTTAGTTAGGAAGAGAATTACTCCACCTAGTCAATTAGACAACTGGTTACTTATGCAGGACAGTGATTAA 1221 0.4021 MDEESVGSEELPVFSDIRRYYCQYCGICRSKKTLITSHINLHHKDMEDAKDEKDNDGGDGLKSNNTCEECGASFKKHAYLLQHMQSHLVEHWIPEKELQNARGRMIGLDGSVSGRETSCEAPSRMPQSRSVQNERPYVCTFDNCQASYRRKDHLTRHLAQHEGKTFKCPIQNCNLLFSLQSNMKRHVKEMHNESSTSTSAEGQKQYVCPEVGCGKVFKYASKLRKHEDSHVKLESVEVLCLEPGCMKHFTNPKCLKEHINSCHLYTTCDICGTEQLKKNMKRHLRMHEADNSSEVFKCVQKDCDCSFSSKSNLHKHEKAVHFKDKPYVCGFSDCGMRFAYKHVRDKHEKTGKHVFTLGDFEEADAEFRSRPRGGRKRVCPSVEMLVRKRITPPSQLDNWLLMQDSD* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0629 406 ProSitePatterns Zinc finger C2H2 type domain signature. 208 230 IPR013087 -
Lan2g0629 406 SUPERFAMILY beta-beta-alpha zinc fingers 164 230 IPR036236 -
Lan2g0629 406 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 92 IPR013087 -
Lan2g0629 406 ProSitePatterns Zinc finger C2H2 type domain signature. 168 191 IPR013087 -
Lan2g0629 406 ProSiteProfiles Zinc finger C2H2 type domain profile. 137 166 IPR013087 -
Lan2g0629 406 ProSiteProfiles Zinc finger C2H2 type domain profile. 206 235 IPR013087 -
Lan2g0629 406 SMART c2h2final6 65 87 IPR013087 -
Lan2g0629 406 SMART c2h2final6 266 287 IPR013087 -
Lan2g0629 406 SMART c2h2final6 137 161 IPR013087 -
Lan2g0629 406 SMART c2h2final6 296 321 IPR013087 -
Lan2g0629 406 SMART c2h2final6 238 263 IPR013087 -
Lan2g0629 406 SMART c2h2final6 20 42 IPR013087 -
Lan2g0629 406 SMART c2h2final6 166 191 IPR013087 -
Lan2g0629 406 SMART c2h2final6 206 230 IPR013087 -
Lan2g0629 406 SMART c2h2final6 327 353 IPR013087 -
Lan2g0629 406 Pfam Zinc finger, C2H2 type 206 230 IPR013087 -
Lan2g0629 406 Pfam Zinc finger, C2H2 type 296 321 IPR013087 -
Lan2g0629 406 Pfam Zinc finger, C2H2 type 137 161 IPR013087 -
Lan2g0629 406 Pfam Zinc finger, C2H2 type 66 87 IPR013087 -
Lan2g0629 406 SUPERFAMILY beta-beta-alpha zinc fingers 66 161 IPR036236 -
Lan2g0629 406 SUPERFAMILY beta-beta-alpha zinc fingers 277 335 IPR036236 -
Lan2g0629 406 ProSiteProfiles Zinc finger C2H2 type domain profile. 296 326 IPR013087 -
Lan2g0629 406 PANTHER ZINC FINGER PROTEIN 423 HOMOLOG 12 398 - -
Lan2g0629 406 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
Lan2g0629 406 ProSitePatterns Zinc finger C2H2 type domain signature. 240 263 IPR013087 -
Lan2g0629 406 ProSitePatterns Zinc finger C2H2 type domain signature. 139 161 IPR013087 -
Lan2g0629 406 Gene3D Classic Zinc Finger 3 92 - -
Lan2g0629 406 Gene3D Classic Zinc Finger 163 196 - -
Lan2g0629 406 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 196 IPR013087 -
Lan2g0629 406 ProSitePatterns Zinc finger C2H2 type domain signature. 329 353 IPR013087 -
Lan2g0629 406 Gene3D Classic Zinc Finger 265 353 - -
Lan2g0629 406 Gene3D Classic Zinc Finger 197 264 - -
Lan2g0629 406 Gene3D Classic Zinc Finger 126 162 - -
Lan2g0629 406 PANTHER ZINC FINGER PROTEIN 12 398 - -
Lan2g0629 406 ProSitePatterns Zinc finger C2H2 type domain signature. 298 321 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0629 134 356 C2H2 Transcription Factor Family AT1G72050 49.818 1.69e-85 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan2g0629 zf-C2H2 0.0059 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0629 K09191 - gmx:100801812 548.51