Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0624 ATGGATAGTATTCAGGAGAATTCAGAGCATTCCTCATCTTCAGTTATTGCTCTAGCAATCAAGGGTAACAAAAAAAGTAAATATGTGGTACAATGGGCACTTAATAAGTTTGTTCCAGAAGGGATGATTATCTTCAAGCTGATTCATGTCCATCCTGGTATAAAGGGGGTTCCAACACCAAAGGGAAATGTGATCCCTCTTTCGCAAGTGCGTAGCGATGTAGTTACTGCTTTCAAGAATGAAGTGGAATGGCAGACAAATCAAATGCTTCTACCTTTCAAGAAATTATGTGAGCAGAGAAAGGTGCATGTAGATGTTGTAATACTTGAATCAGATGATGTAGCAACTGCAGTAGCAGAGGAAGTAGCTAAGGGTCCTACAACTAAACTTGTTGTTGGAGCTTCATCTAATGGCATATTTACAAGTAAGCATACAGGTTTGTCTGCAAAAGCCTCAATATGTACTCCAAGATTTTGTACAGTTTATGCTGTTTCAAAAAGAAAATTGTTGATACGGCCGTCAGACGTACAGATTGATGAAAGCATTATGCACGATGACGCTAGCGAAACCAGTTTTTCCTCAAACAGCTCACCAAAGTTCACTTCCACTTCTCAGATAGACTCTGGATCAGTTGCATCATACACTCATATGCATTCCTCTTACCTATCAACACAGCAATTTCGAGCTCGTTCGAGTAAAAATAAGACCCTGCTGAGTAAATCCTCTAGTATAAGTAAAACCAACCATTCTAGAGGCCAGTCTCTAGATATTGGAAGAGAAAATACTGCTATGAGTTCTGCCAGAAACTCGGATTTTGCACAGTGTAGGGCCTCTAGTTGCAAAAGTATTATATCAGATCCTGGATCTTCGATTTATGATCAAAATTTCACCAAGGATGTGCCATTAGCAACTGAACTTCCTTCGCGTAATAGGCAGGCCAATAATAACCTTGAACTGGAAAAGTTGAGAATTAAACTAAGACATGCCCAAGGAATGCATGTAGTAGCTCAGAGAGAGAACATTGACGCATCCCGGAAGCTGAATGAACTAAGCAAGAAGAGATCAGAGGAATCCATGAAACTGAAGGAGATTATTGCTAAGGAGGAGATGGCAAAAAAATTAGCAAATTACCAAAGAAGGAAATATGAAGCTGCAGAAAAAGAAGTTAAATATTTGAAAGAATGTGCTGAAAGAGAAGCTACGGAACGAAAAGAAGTGGAATTGAAAGCCATTCATGCTGCCAAAAAGAAAGTAAAGCTGAAGGATGCTCTTAGTGGTTCCTCGCCCCAGTACCGAAAATTTACATGGGATGAAATAATGTCTGCTACTTCATCTTTCTCGGACGATCTGAAAATTGGAATGGGAGCATACGGAATCGTGTACAAGTGCAGTTTGTATCATACAACTGTTGCTGTTAAAGTTCTCCACTCTTGTGGTAACCACAAGACCAAGCAATTCCAGCAGGAGCTAGAAATATTGAGCAAAATTCGTCATCCGAACTTGCTTCTTCTTCTTGGTGCATGTCCTGATCACGGATGCCTTGTGTATGAATATATGGAGAATGGTAACTTGGAGGACAGATTACTGCGAAAAAACAGTACTGCCCCGATCCCATGGTTTGAGAGGTATCGGATAGCTTGGGAAATTGCATCAGCTCTTGCCTTTCTTCACAGCTCAAAGCCAACACCTATCATTCACCGTGACTTGAAACCAGCGAACATCTTGCTTGGTCGTAACCTAGTCAGCAAGATTGGTGATATTGGCCTTTCTATAATGCTCAATTCGGATAATTTGTCTACCATGTATAAGGACACTGAGCCCGTTGGAACACTCTGCTACATAGATCCTGAGTATCAAAGGAGTGGGGTAATATCTCCAAAATCTGATGTTTATGCTTTCGGAATGGTGATCTTACAGCTATTGACAGCAAAACCAGCCATAGCACTTACTCATGTGGTTGAAAGAGCAATTGATGCAGGGAATTTAACAGACATATTGGATCCTATGGCAGGGACTTGGCCGATTCATGAAACACTTGACTTAGCCCGGTTAGGACTGAAATGCGCAGAACTTCAGCGTAGAGACAGGCCCGATTTGAAAGATCATGTGCTTCCAACACTAGAGAGATTGAAAGAAGTTGCTGATAGAACACAACACTCTGCTTCAGTAGTTACTATTAAACCCAGACCTCCTAATCACTTTATCTGTCCAATTCTTCAGGATGTGATGGATGATCCTTGCGTCGCTGCGGACGGATATACATATGATTGCAAAGCAATCGAAAAATGGTTTCAAGAGAACGACAAATCGCCCATCACAAATATGATTTTACCTCATAAGAATCTAATTCCGAATTACACACTTCTGTCAGCAATTATAGAGTGGAAGTCTAGAAAATTTTGA 2403 0.4066 MDSIQENSEHSSSSVIALAIKGNKKSKYVVQWALNKFVPEGMIIFKLIHVHPGIKGVPTPKGNVIPLSQVRSDVVTAFKNEVEWQTNQMLLPFKKLCEQRKVHVDVVILESDDVATAVAEEVAKGPTTKLVVGASSNGIFTSKHTGLSAKASICTPRFCTVYAVSKRKLLIRPSDVQIDESIMHDDASETSFSSNSSPKFTSTSQIDSGSVASYTHMHSSYLSTQQFRARSSKNKTLLSKSSSISKTNHSRGQSLDIGRENTAMSSARNSDFAQCRASSCKSIISDPGSSIYDQNFTKDVPLATELPSRNRQANNNLELEKLRIKLRHAQGMHVVAQRENIDASRKLNELSKKRSEESMKLKEIIAKEEMAKKLANYQRRKYEAAEKEVKYLKECAEREATERKEVELKAIHAAKKKVKLKDALSGSSPQYRKFTWDEIMSATSSFSDDLKIGMGAYGIVYKCSLYHTTVAVKVLHSCGNHKTKQFQQELEILSKIRHPNLLLLLGACPDHGCLVYEYMENGNLEDRLLRKNSTAPIPWFERYRIAWEIASALAFLHSSKPTPIIHRDLKPANILLGRNLVSKIGDIGLSIMLNSDNLSTMYKDTEPVGTLCYIDPEYQRSGVISPKSDVYAFGMVILQLLTAKPAIALTHVVERAIDAGNLTDILDPMAGTWPIHETLDLARLGLKCAELQRRDRPDLKDHVLPTLERLKEVADRTQHSASVVTIKPRPPNHFICPILQDVMDDPCVAADGYTYDCKAIEKWFQENDKSPITNMILPHKNLIPNYTLLSAIIEWKSRKF* 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0624 800 Gene3D Phosphorylase Kinase; domain 1 414 518 - -
Lan2g0624 800 SUPERFAMILY Protein kinase-like (PK-like) 427 701 IPR011009 -
Lan2g0624 800 SMART serkin_6 446 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan2g0624 800 SMART Ubox_2 733 795 IPR003613 GO:0004842|GO:0016567
Lan2g0624 800 Gene3D Transferase(Phosphotransferase) domain 1 519 727 - -
Lan2g0624 800 CDD STK_N 15 166 - -
Lan2g0624 800 ProSiteProfiles U-box domain profile. 729 800 IPR003613 GO:0004842|GO:0016567
Lan2g0624 800 CDD RING-Ubox_WDSUB1_like 734 774 - -
Lan2g0624 800 ProSiteProfiles Protein kinase domain profile. 446 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan2g0624 800 MobiDBLite consensus disorder prediction 235 259 - -
Lan2g0624 800 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 35 11 796 - -
Lan2g0624 800 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 729 800 IPR013083 -
Lan2g0624 800 SUPERFAMILY RING/U-box 728 798 - -
Lan2g0624 800 Pfam U-box domain 731 798 IPR003613 GO:0004842|GO:0016567
Lan2g0624 800 ProSitePatterns Serine/Threonine protein kinases active-site signature. 564 576 IPR008271 GO:0004672|GO:0006468
Lan2g0624 800 Coils Coil 347 387 - -
Lan2g0624 800 Gene3D HUPs 8 145 IPR014729 -
Lan2g0624 800 Pfam Protein tyrosine and serine/threonine kinase 451 700 IPR001245 GO:0004672|GO:0006468
Lan2g0624 800 ProSitePatterns Protein kinases ATP-binding region signature. 452 473 IPR017441 GO:0005524
Lan2g0624 800 PANTHER OS02G0152300 PROTEIN 11 796 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0624 Lan-Chr2 10670341 10677832 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0624 13 799 U-box Gene Family AT4G25160 49.881 0.0 793
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Lan2g0624 PK_Tyr_Ser-Thr 1.1e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0624 - - gsj:114409387 1190.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0537 5 10856125 10859319 Lan2g0624 2 10670341 10677832 LSH
Lan10g0199 10 1279591 1282366 Lan2g0624 2 10670341 10677832 PCT
Lan2g0624 2 10670341 10677832 Lan10g0199 10 1279591 1282366 PCT