Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0617 ATGAGCGATCATTTGGTGCTGTATGTGGACCGGCCGGTGCCGGTTGAGCCGTTGAGTCAAGACCCGGTTCAGCCATCTCCTGAGCCTTCGCTGCCAGTGGATGTTGCGGGCCCCTCAGATTCTGCTTTGGTGGAAAGCGACTGTGAGGGTGAGGGTGAGGAGGAGCCGCTGTTGCAGATGGCGGAGTGTCGCATTTGTCAGGAGGAGGACAGTATTAGCAATCTAGAGTCTCCCTGCACTTGCAGAGGCAGCCTTAAGTATGCTCATAGAAAGTGCGTCCAGCATTGGTGCAACGAGAAAGGTGACATAACTTGTGAGATATGTCACAAGCCCTATCAACCTGGTTATACTGCCCCGCCACCTTGTCCACGTCCTGAAGAAACTACCATTGATATTGGTGGAGGCTGGAGAATCTCTGGCACACCTTTGGATTTTCATGATCCTCGACTCTTGGCAATTGCAGAGGCAGAACGCCAATTCTTGGAAGCCGAATATGATGGATATGCTGCGTCTAATGCCAGTGGAGCTGCATTTTTCCGTTCAGCTGCTCTAATTTTAATGGCACTTTTACTCTTGAGGCATGCACTTTTTGTCACGGATGCTGATGCAGATGCTGAAGATGATCCATCCACTTTTTTCTCCCTTTTCTTGCTTCGAGCAGCTGGTTTTCTTTTGCCTTGCTATATCATGGCTTGGGCAATCAGTATTTTACAGCGTCGGCGACAAAGACAAGAGGCTGCTGCACTGGCTGCAACCCAAGTTGCTTTTGTTCTACAATCCGGGCATCGCCGGGGTCTACAATTTGCCATAGCACCAGGACCAACGGTGGTGAATACACACCAGGAACAAGTGTAG 855 0.5041 MSDHLVLYVDRPVPVEPLSQDPVQPSPEPSLPVDVAGPSDSALVESDCEGEGEEEPLLQMAECRICQEEDSISNLESPCTCRGSLKYAHRKCVQHWCNEKGDITCEICHKPYQPGYTAPPPCPRPEETTIDIGGGWRISGTPLDFHDPRLLAIAEAERQFLEAEYDGYAASNASGAAFFRSAALILMALLLLRHALFVTDADADAEDDPSTFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSGHRRGLQFAIAPGPTVVNTHQEQV* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0617 284 Pfam Protein of unknown function (DUF3675) 114 234 IPR022143 -
Lan2g0617 284 MobiDBLite consensus disorder prediction 13 42 - -
Lan2g0617 284 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 272 - -
Lan2g0617 284 ProSiteProfiles Zinc finger RING-CH-type profile. 55 115 IPR011016 GO:0008270
Lan2g0617 284 SMART ringv_2 62 109 IPR011016 GO:0008270
Lan2g0617 284 CDD RING_CH-C4HC3_MARCH 63 109 - -
Lan2g0617 284 Pfam RING-variant domain 63 108 IPR011016 GO:0008270
Lan2g0617 284 SUPERFAMILY RING/U-box 61 113 - -
Lan2g0617 284 Coils Coil 151 171 - -
Lan2g0617 284 MobiDBLite consensus disorder prediction 18 32 - -
Lan2g0617 284 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 118 IPR013083 -
Lan2g0617 284 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 272 IPR033275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0617 Lan-Chr2 10185647 10189774 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0617 37 96 C3H Transcription Factor Family AT1G11020 39.683 2.80e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0617 - - ahf:112734090 431.024