Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0580 ATGGGTGAAGTGAAGGCAGTCGTCCCAGAGTCAGTGCTGAAGAAGCAGAAGAGGGAGGAGGAATGGGCTTTGGCCAAACAGACTGAGTCTGAAGTTGCCAAGAAGAAGAGAGCTGAGAACCGTAAGCTTATCTTCAACCGTGCCAAGCAGTATGCTAAGGAATACAGTGATCAGGAGAAGGAATTGATCAGGTTGAAGCGTGAGGCAAAGCTGAAGGGTGGATTTTATGTTGACCCAGAGGCTAAGCTACTGTTCATTATTCGCATCCGTGGTATTAATGGCATGGACCCCAAGACAAGGAAGATCCTTCAGCTGCTGCGTTTGAGACAGGTTTTCAATGGTGTATTCCTTAAAGTGAACAAGGCCACAGTGAACATGTTGCGCAGAGTTGAGCCTTATGTTACTTATGGATACCCGAATCTGAAAAGTGTTAGAGAACTCGTTTACAAGAGGGGCTATGGTAAGCTAAACAAGCAGAGAATTGCTCTCACTGACAACTCCATCATTGAGCAGGGACTCGGCAAGCATGGAATCATATCAACCGAAGATCTTATCCATGAGGTCCTAACTGTGGGACCCCATTTTAAGGAGGCAAACAACTTCCTGTGGCCATTTAAGCTGAAAGCTCCATTGGGTGGCTTAAAGAAGAAGAGGAACCACTATGTTGAAGGAGGAGATGCTGGAAACAGGGAGAATTACATTAATGAGCTAATCAGGAGAATGAATTAG 729 0.4554 MGEVKAVVPESVLKKQKREEEWALAKQTESEVAKKKRAENRKLIFNRAKQYAKEYSDQEKELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINGMDPKTRKILQLLRLRQVFNGVFLKVNKATVNMLRRVEPYVTYGYPNLKSVRELVYKRGYGKLNKQRIALTDNSIIEQGLGKHGIISTEDLIHEVLTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0580 242 Pfam Ribosomal L30 N-terminal domain 8 79 IPR012988 -
Lan2g0580 242 Gene3D - 185 242 IPR036919 -
Lan2g0580 242 Gene3D - 83 184 IPR036919 -
Lan2g0580 242 PANTHER 60S RIBOSOMAL PROTEIN L7 4 242 IPR039699 -
Lan2g0580 242 CDD Ribosomal_L7_archeal_euk 83 242 IPR035808 -
Lan2g0580 242 ProSitePatterns Ribosomal protein L30 signature. 102 134 IPR018038 -
Lan2g0580 242 Pfam Ribosomal protein L30p/L7e 84 134 IPR016082 -
Lan2g0580 242 TIGRFAM uL30_euk: 60S ribosomal protein uL30 9 242 IPR005998 GO:0000463|GO:0003735|GO:0022625
Lan2g0580 242 PANTHER 60S RIBOSOMAL PROTEIN L7-RELATED 4 242 - -
Lan2g0580 242 SUPERFAMILY Ribosomal protein L30p/L7e 83 242 IPR036919 -
Lan2g0580 242 Coils Coil 48 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0580 Lan-Chr2 8954486 8957263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0580 2 242 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 84.647 6.53e-156 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0580 K02937 - gmx:100813342 436.802