Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0578 ATGTTGAACAGAAAGCAATCCCCCTCCCACACACACACACATGTTTTTAATCTGTTGATTTTGAACCTGAACTCATTTATTGAGCACATATGGCAGTTGGGTATGAATTTTGATCTTATCAGATCAAATACAACAATTCTCCATGTCTTCCCCTTCAATTCTGAGAAAAAGCGAGGTGGTGTTGCCCTGAAGCTGGTGGACTCTGGAGTACATATTCATTGGAAAGGAGCTGCAGAGATTGTTCTAGGAGCGTGTACTCAGTATCTTGATTCAAATGGTGACTTGCAATCGATTGAAAAAGAGAAGGCATTTTTCAGGGAGGCGATTGATGATATGGCTGCTCGCAGCTTGCGTTGTGTTGCCATTGCATACAGATCATATGAATTAGATAAAGTTCCATCTAATGAGGAGGAATTGGACCAGTGGTCCTTACCAGAAGAAGAGCTTGTTTTGCTTACTATTGTTGGAATAAAGGATCCTTGTCGCCCTGGAGTCAAAGAGGCTGTGAGAATATGCACTGATGCTGGTGTTAAGGTACGCATGGTTACCGGAGACAACCTTCAGACAGCAAAGGCAATAGCTCTGGAGTGTGGGATACTGGCTTCAATTGAAGATGCTGTTGAGCCAAATATAATTGAAGGAAAGAGTTTCCGTGAACTACCTGAAAAAGAAAGGGAACAGGTTGCTAAGAAAATAACGGTGATGGGGAGGTCTTCTCCTAATGACAAGCTTTTGCTTGTGCAAGCACTACGTAAAGGAGGTGAAGTTGTTGCTGTGACTGGAGATGGAACCAATGATGCTCCTGCACTTCATGAGGCAGATATTGGTCTTGCTATGGGCATTGCAGGAACTGAAGTTGCCAAAGAAAGCTCGGATATTATAATCTTGGATGACAACTTTGCATCAGTAGTAAAGGTTGTCCGCTGGGGCCGATCTGTATATGCAAACATTCAGAAATTTATCCAGTTCCAGCTTACTGTTAACGTTGCTGCTCTTGTAATAAATGTTGTCGCAGCAATAAGTTCTGGTGATGTTCCTTTAAATGCAGTACAGCTTTTGTGGGTCAACCTTATCATGGACACACTTGGGGCCCTTGCACTCGCCACTGAACCACCAACAGACCAGCTAATGAACAGATCGCCAGTTGGCCGAAGGGAACCTCTTATTACGAATATCATGTGGAGAAACTTGCTTGTACAGGCTGTCTACCAAGTTGCGATTCTTCTAGTTCTTAAGTTTAGAGGTGAAAGTATTCTACCTAAACAAGATACTAGAGCTCATGATATTCAAATGAAGAATACTTTAATTTTCAATGCATTTGTCATGTGCCAAATATTCAATGAGTTCAATGCTCGGAAACCAGAAGAAATGAATGTCTTCCGGGGAGTAACTAAGAACAAACTCTTTGTGGGAATTGTTGGAGTGACCTTTATACTTCAGATAATCATCATTGAGTTCCTTGGAAAGTTCACCTCAACAGTGAGGCTTGATTGGAAGCTTTGGCTTGCTTCTCTTATCATGGGCGTTTTCAGTTGGCCTCTTGCTATAGCTGGAAAATTCATTCCGGTTCCGAAAACACCATTGTCCCGATTTGTCTTGAGGCCACTTCGGCGATTGAGGAGGTCTCGGGCTGCCGCAGCACAACAATAG 1650 0.4279 MLNRKQSPSHTHTHVFNLLILNLNSFIEHIWQLGMNFDLIRSNTTILHVFPFNSEKKRGGVALKLVDSGVHIHWKGAAEIVLGACTQYLDSNGDLQSIEKEKAFFREAIDDMAARSLRCVAIAYRSYELDKVPSNEEELDQWSLPEEELVLLTIVGIKDPCRPGVKEAVRICTDAGVKVRMVTGDNLQTAKAIALECGILASIEDAVEPNIIEGKSFRELPEKEREQVAKKITVMGRSSPNDKLLLVQALRKGGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAISSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDQLMNRSPVGRREPLITNIMWRNLLVQAVYQVAILLVLKFRGESILPKQDTRAHDIQMKNTLIFNAFVMCQIFNEFNARKPEEMNVFRGVTKNKLFVGIVGVTFILQIIIIEFLGKFTSTVRLDWKLWLASLIMGVFSWPLAIAGKFIPVPKTPLSRFVLRPLRRLRRSRAAAAQQ* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0578 549 SUPERFAMILY Calcium ATPase, transmembrane domain M 310 523 IPR023298 -
Lan2g0578 549 PANTHER CALCIUM-TRANSPORTING ATPASE 29 536 - -
Lan2g0578 549 Gene3D - 40 160 IPR023299 GO:0000166
Lan2g0578 549 Pfam Cation transporting ATPase, C-terminus 345 520 IPR006068 -
Lan2g0578 549 PRINTS P-type cation-transporting ATPase superfamily signature 153 164 - -
Lan2g0578 549 PRINTS P-type cation-transporting ATPase superfamily signature 175 185 - -
Lan2g0578 549 PRINTS P-type cation-transporting ATPase superfamily signature 260 279 - -
Lan2g0578 549 PRINTS P-type cation-transporting ATPase superfamily signature 284 296 - -
Lan2g0578 549 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 226 340 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lan2g0578 549 PANTHER CATION TRANSPORTING ATPASE 29 536 - -
Lan2g0578 549 Coils Coil 95 115 - -
Lan2g0578 549 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 33 523 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Lan2g0578 549 Gene3D - 161 305 IPR023214 -
Lan2g0578 549 Pfam Cation transport ATPase (P-type) 32 87 - -
Lan2g0578 549 Gene3D - 306 510 - -
Lan2g0578 549 Pfam haloacid dehalogenase-like hydrolase 150 274 - -
Lan2g0578 549 SUPERFAMILY HAD-like 102 365 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0578 Lan-Chr2 8908389 8916810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0578 31 545 Primary Pumps ATPases AT3G21180 79.651 0.0 850
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0578 K01537 - gmx:100777143 877.085