Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lan2g0541 | ATGTCTTTCACAGGAACTTTGGACAAATGCACAGCTTGTGAAAAGACTGTTTATGTGGTTGACTTGTTAACTCTTGAAGGAATTCCTTACCATAAAAACTGCTTCAAATGCACCCATTGCAATGGAGTACTTACGATGAACACATACTCGTCAATGGATGGAGTCCTCTATTGTAGGACACATTTTGAACAACTTTTCAAGGAATCTGGCAATTTTGTCAAGAACTTTCAAGCAGCAAAGTCTTCTGAGCAGAACAAGACCCCAAGTAAACTCTCTTCCATGTTTAGTGGGACCTTAGACAAATGCTCGGTTTGCACAAAAACAGTCTATCCATTAGAAAAGGTGACACTGGAAGGGGAATGCTTTCACAAGAATTGTTTTAGGTGTGCTCATGGAGGGTGCCACCTAACACATTCCTCCTATGCTGCCCTAGATGGTGTCCTCTATTGCAGGGTCCATTTTGCACAACTTTTCATGGAGAAAGGGAACTACAGCCATGTACTCCAAGCTGCTGCACACAAGAGAACTGGTTCTTCTACACCTCCTGAACCAATTGAGTTGCCACCACCAGAGCCACAACCTGAGGACAAAACAGAAGAAGAAAAAGAAGAAGAAAAAAAGGAACATGAAGAAACCTCTTGA | 642 | 0.4221 | MSFTGTLDKCTACEKTVYVVDLLTLEGIPYHKNCFKCTHCNGVLTMNTYSSMDGVLYCRTHFEQLFKESGNFVKNFQAAKSSEQNKTPSKLSSMFSGTLDKCSVCTKTVYPLEKVTLEGECFHKNCFRCAHGGCHLTHSSYAALDGVLYCRVHFAQLFMEKGNYSHVLQAAAHKRTGSSTPPEPIELPPPEPQPEDKTEEEKEEEKKEHEETS* | 214 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lan2g0541 | 213 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 36 | 76 | - | - | |
| Lan2g0541 | 213 | Gene3D | Cysteine Rich Protein | 98 | 166 | - | - | |
| Lan2g0541 | 213 | ProSiteProfiles | LIM domain profile. | 100 | 160 | IPR001781 | - | |
| Lan2g0541 | 213 | SMART | lim_4 | 101 | 153 | IPR001781 | - | |
| Lan2g0541 | 213 | SMART | lim_4 | 9 | 61 | IPR001781 | - | |
| Lan2g0541 | 213 | PANTHER | OS06G0237300 PROTEIN | 1 | 204 | IPR045268 | GO:0051015 | |
| Lan2g0541 | 213 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 94 | 127 | - | - | |
| Lan2g0541 | 213 | MobiDBLite | consensus disorder prediction | 172 | 213 | - | - | |
| Lan2g0541 | 213 | Coils | Coil | 195 | 213 | - | - | |
| Lan2g0541 | 213 | Pfam | LIM domain | 102 | 157 | IPR001781 | - | |
| Lan2g0541 | 213 | Pfam | LIM domain | 10 | 65 | IPR001781 | - | |
| Lan2g0541 | 213 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 128 | 167 | - | - | |
| Lan2g0541 | 213 | MobiDBLite | consensus disorder prediction | 190 | 213 | - | - | |
| Lan2g0541 | 213 | Gene3D | Cysteine Rich Protein | 5 | 72 | - | - | |
| Lan2g0541 | 213 | PANTHER | GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN | 1 | 204 | - | - | |
| Lan2g0541 | 213 | ProSitePatterns | LIM zinc-binding domain signature. | 10 | 44 | IPR001781 | - | |
| Lan2g0541 | 213 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 3 | 35 | - | - | |
| Lan2g0541 | 213 | ProSiteProfiles | LIM domain profile. | 8 | 68 | IPR001781 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lan2g0541 | Lan-Chr2 | 7399711 | 7401593 | Dispersed/Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | LIM | Lan2g0541 | LIM | 3.3e-09 | CL0167 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lan2g0541 | - | K09377 | gmx:100800234 | 339.347 |