Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0531 ATGAAGCCCATCTTTGTTGGAAACCTTGATTTCGAGTCGCGCCTCTCTGATGTTGAGAGGCTCTTCAGAAGATACGGCAAGGTTGATAGAGTTGATCTCAAACCGGGGTTTGCTTTTATCTTCATGGAAGATGAACGTGATGCTGATTATGCAATCAGAAGACTTGATAGAACAGAATTTGGTAGGAAGGGGCGCCAGATACGTGTTGAGTGGTCTAAGCAAGAACGTGACAGTAGAAGGCCAGGCGGTGACTCAAAGAAATCTTCAACTAATACGAGGCCATCAAAGACTTTGTTTGTCATCAATTTTGATCCAGTTCACACCAGGACTAGGGATCTGGAGAGGCACTTTGATACCTATGGAAAAATATCAAATATAAGGATCAGAAGGAATTTCGCTTTTATTCAGTTTGAAACCCAGGAGGACGCTACTAGAGCTTTGGATGCAACTAACTTGAGCAATTTTCTGGATCGTGTTATCACCGTGGAGTATTCTATAAAAGATGATGACAGAAGGAATGGATACAGTCCTGATAGAAGAGGACGTGACTCTCCTGATGGGAGATATGATCGTCGCAGATCTCCGAGTCCGTATCGTAGAGGTAGAGGTAGCCCAGATTATGGCCATGGATCAGATCCAGCTTCCAGACCAGAACCTAGAGGAAGCCCCAAGTATGAACAAGCTGAAAGCCCAATGACTGGGAGATATGACAGCCAGTCCCCACCACCCCGAGATAGGTCACGATCCTGA 750 0.4533 MKPIFVGNLDFESRLSDVERLFRRYGKVDRVDLKPGFAFIFMEDERDADYAIRRLDRTEFGRKGRQIRVEWSKQERDSRRPGGDSKKSSTNTRPSKTLFVINFDPVHTRTRDLERHFDTYGKISNIRIRRNFAFIQFETQEDATRALDATNLSNFLDRVITVEYSIKDDDRRNGYSPDRRGRDSPDGRYDRRRSPSPYRRGRGSPDYGHGSDPASRPEPRGSPKYEQAESPMTGRYDSQSPPPRDRSRS* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0531 249 MobiDBLite consensus disorder prediction 71 94 - -
Lan2g0531 249 SMART rrm1_1 3 70 IPR000504 GO:0003723
Lan2g0531 249 SMART rrm1_1 97 163 IPR000504 GO:0003723
Lan2g0531 249 PANTHER - 4 212 - -
Lan2g0531 249 MobiDBLite consensus disorder prediction 169 199 - -
Lan2g0531 249 SUPERFAMILY RNA-binding domain, RBD 85 175 IPR035979 GO:0003676
Lan2g0531 249 SUPERFAMILY RNA-binding domain, RBD 4 85 IPR035979 GO:0003676
Lan2g0531 249 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 4 212 - -
Lan2g0531 249 MobiDBLite consensus disorder prediction 71 86 - -
Lan2g0531 249 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 167 IPR000504 GO:0003723
Lan2g0531 249 MobiDBLite consensus disorder prediction 169 249 - -
Lan2g0531 249 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 160 IPR000504 GO:0003723
Lan2g0531 249 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 63 IPR000504 GO:0003723
Lan2g0531 249 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Lan2g0531 249 Gene3D - 1 85 IPR012677 -
Lan2g0531 249 Gene3D - 86 212 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0531 Lan-Chr2 6884808 6888071 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0531 4 172 Eukaryotic Initiation Factors Gene Family AT1G49760 23.243 7.12e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0531 K12893 - gmx:100797778 381.333