Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0494 ATGGGTCGTGGCAAGGTTGAGCTGAAAAGGATTGAGAATAGCAGCAATAGGCAAGTAACATTTTCTAAGAGGAGAACTGGGTTGCTGAAGAAGGCTAAGGAACTTTCTGTTCTATGTGATGCTGAGGTTGCTGTCATCATTTTCTCCAACACTGGAAAGCTTTCTCAGTTTTCCAGTTGTGATATGAACGGAACACTTTCAAAATACAACAAATGTGTTGATTCTACAGAAACTGCTGTTGTGGAACATAAGACAGAGAAAGAAGATTCTACAATGGTGGAGATTCTAAGAGATGAAATTGCAAAACTTGAAAGAAAGAAACAAAAATTGCTTGGTAAGGACCTTAAGGGGTTGAGCTTAAAAGAGTTGCAAAATCTGGAGAAGCAACTTAATGAAGGGCTATTGTCTGTCACCAAGAGAAAGGTTAAGGAACTTCGCTCCCTATTTCCTGTAACAGAAAATGTGGTCCCATCTTATCTTCAATATCAGAATATTGAAAGAAATAATACTTTTGCACTTGCTGGGGCCTCAAGTTCTAACTTGGCTAGTAATAGTGGAAATGATGGAGGAGATTCAGATAACACATTGCAATTGGGTTTTCTCAATGATGTTCATCACAAGGGAATGGTGTCTGAGAAGGAAACCTCTTTGAATGACTCAGAGTGTGCTCTACTATGA 678 0.3894 MGRGKVELKRIENSSNRQVTFSKRRTGLLKKAKELSVLCDAEVAVIIFSNTGKLSQFSSCDMNGTLSKYNKCVDSTETAVVEHKTEKEDSTMVEILRDEIAKLERKKQKLLGKDLKGLSLKELQNLEKQLNEGLLSVTKRKVKELRSLFPVTENVVPSYLQYQNIERNNTFALAGASSSNLASNSGNDGGDSDNTLQLGFLNDVHHKGMVSEKETSLNDSECALL* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0494 225 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lan2g0494 225 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lan2g0494 225 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL15 1 204 - -
Lan2g0494 225 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Lan2g0494 225 PANTHER MADS BOX PROTEIN 1 204 - -
Lan2g0494 225 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lan2g0494 225 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lan2g0494 225 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Lan2g0494 225 Pfam K-box region 84 143 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lan2g0494 225 Coils Coil 86 113 - -
Lan2g0494 225 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Lan2g0494 225 ProSiteProfiles K-box domain profile. 86 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lan2g0494 225 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lan2g0494 225 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lan2g0494 225 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0494 Lan-Chr2 5894446 5900454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0494 1 220 MADS-box Gene Family AT5G13790 42.169 3.73e-53 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lan2g0494 K-box 4.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0494 - - zju:107417456 239.195