Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0485 ATGTCCTCTCAGGATCAAGCCCTAGTATCCCTTCTCTCTCAGATTGCCCTTTCCTTCGATGGCGCCATTTTGGGCTTTGCTTTTGCCTACGCCGCCGTCCGTTCCCTTCTCAATTTCACCGCCACCTCCGCCGCACTCCGAAAGCTTCGCACCGCACCTTCCCTCTCTGTCTCTGACCTCCGTTCTATCCTCACCGAGAGCTCCGACGAGGACGGAAATTCCGGCGATGGTAAAATAGTAATTGTACGTGGTACCGTTGATGCCAAGTCCGCCGTTGACGGTAGCTGGAAAGCCTTGATGCCCGGCGTCTTGGTTTCTCGCGAGTCTGGTGATAAAGCCGTTGTTATTCAAAGAACTCAAACGTGTATATACAATGAATGGAAGGGCTTATTTGGATGGACTTCTGATCTTCGAGCTATATTTACAAGATCCTGGAGAAAACAAGAGTCCACATCTTTAAGGAAGGTGCCTTTTGTTCTCATTGATGTCGGGCGACGGCCAAATAGTGGATATGTTGTTGTCAACTTGGATGGATCAAGACATCCTTTACCTCTGACTACAGTTTATCATAAGTTGCAACCTATAAATGCTTCTCCTTATACTTTCTTGCAAGCACTTTTTGGCCATGAATATCCGGTTGGACTACTAGATGAAGAGAAAATTCTTCCTTTGGGGAAGGATATCAGTGCTGTTGGCCTTTGCAGTTTAAGAAATGGAATTGCTGAAATTAAGCCAAGCAAAGATCTACCATATTTTCTGTCTGACTTGAGTAAAGATCAGATGATTGTAGATCTTTCCTTCAAAACAACAGTACTGCTTTGGGGTGGTATTGTTCTTGGTTCAATGTCTGTTGGGATCCTTGGGTATGCAGTAGTGAGGAACTGGAATAAGTGGAAGCAGTGGAAACAGCAGCGGGAGCTCCAGCAACAAAGGCAAGATGTGAGTGGTGATTTTGTTTATCAGTTGGAAGACGAAAATGAAGATGTCCCAGATGGACAATTATGTGTTGTATGCCTGATGAGGAGAAGGCGCTCTGCTTTCATTCCCTGTGGGCATCTTGTATGCTGCCATCGGTGTGCTGTATCAGTTGAACGTGAAGTGGCACCCAAGTGTCCCGTTTGTCGTCAGGAGATTCGAGATTCAGTAAGAATTTTTGAATCTTGA 1164 0.457 MSSQDQALVSLLSQIALSFDGAILGFAFAYAAVRSLLNFTATSAALRKLRTAPSLSVSDLRSILTESSDEDGNSGDGKIVIVRGTVDAKSAVDGSWKALMPGVLVSRESGDKAVVIQRTQTCIYNEWKGLFGWTSDLRAIFTRSWRKQESTSLRKVPFVLIDVGRRPNSGYVVVNLDGSRHPLPLTTVYHKLQPINASPYTFLQALFGHEYPVGLLDEEKILPLGKDISAVGLCSLRNGIAEIKPSKDLPYFLSDLSKDQMIVDLSFKTTVLLWGGIVLGSMSVGILGYAVVRNWNKWKQWKQQRELQQQRQDVSGDFVYQLEDENEDVPDGQLCVVCLMRRRRSAFIPCGHLVCCHRCAVSVEREVAPKCPVCRQEIRDSVRIFES* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0485 387 Pfam E3 Ubiquitin ligase 139 286 IPR022170 GO:0004842|GO:0006996|GO:0016567
Lan2g0485 387 Pfam Zinc finger, C3HC4 type (RING finger) 333 380 - -
Lan2g0485 387 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 1 387 - -
Lan2g0485 387 ProSiteProfiles Zinc finger RING-type profile. 335 375 IPR001841 -
Lan2g0485 387 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 1 387 IPR044247 GO:0004842
Lan2g0485 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 319 387 IPR013083 -
Lan2g0485 387 SUPERFAMILY RING/U-box 322 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0485 Lan-Chr2 5639072 5649910 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0485 332 384 C3H Transcription Factor Family AT3G06140 39.623 7.90e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0485 K15688 - gmx:100811939 634.795