Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0479 ATGAACAATTGGTTGGGTTTCTCTCTAACTCCTCACTTGAGGATTGATGAAGATTTTGGGAGAGAAAATGAAGATCATGGAAGAGGACCCTATCCTGTTATGCCTTTACACTCTGATGGTTCTCTCTGTGTTGCTGACTCCTTTAGGCACCACCATTCAGCTCCACCTCAAGAATGGAGATATGATAATGGAATAGGTGGAGGGAATTCAAGTGAAGAAGGTCCAAAGCTTGAAGATTTCTTGGGTTGCTACTCAAACTCCACTATTGCTGAAACAAAAGTCTTTTGCCAACAAAACACAACACAACATGACCAAAACCAAAACAACATTTCCAAAATTAATGAGACTATGGCCTCAACTTTTAGCACCAACAACAATACTGAGATTGAAACTGAGGAGAATAATCTCACAAACCAATCTTCTATGGTCCAATCTTTCCATGCATATAATAATAACCCACATGCATTAATCACCAACAATAGCATGTACAAGTCATGGTTGTCACAAACTCAGTTTTCTGATACAAAACAACCTTCTTCAGTAGAGGCAAAAAATGGGTGTAACTTCCAGTCTCTGAATTTGACTATGAGCCCAACTGTGCAAAATAAGGTGGGTGCAATTTCACCTTTGCAAGTGAATGATGATAGTAGAAAACGTTCCATAGTGAAAACTCAAGTTAGAGAACCAGTGCCTAGAAAATCTATTGATACTTTTGGGCAGAGAACTTCTCAATACCGTGGTGTTACAAGGCATAGATGGACAGGGAGATATGAGGCACATTTGTGGGATAATAGCTGCAGAAAAGAAGGGCAAACAAGGAAAGGAAGGCAAGTTTACCTTGGTGGTTATGACAAGGAAGAAAAAGCAGCAAGGGCTTATGACTTAGCTGCACTCAAGTATTGGGGTCCAACAACTCACATAAATTTCCCTTTAAGCACTTATGAGAAGGAAATTGAAGAGATGAAGAACATGACCAGGCAAGAATTTGTTGCCAATTTAAGAAGGAAGAGCAGTGGATTTTCAAGAGGGGCTTCTGTCTACAGAGGAGTGACAAGACACCATCAACATGGAAGGTGGCAGGCTCGGATCGGAAGGGTTGCCGGAAACAAGGACTTGTATCTTGGCACATTCAGCACTCAAGAAGAAGCTGCTGAAGCATATGATATAGCAGCAATCAAGTTTAGAGGAACAAGTGCTGTCACCAACTTTGACATAAGCAGGTATGATGTGAAGAGAATTTCCTCAAGTTCTACTCTCATTGCAGGCGACCTTGCAAAAAGGTCTCCGAAAGACTCGGCTCCTGCTGCTGTGGCTGGAACTGAGGATTTCAATCCTTGTGGTTCATCGACACCTCAACCCCCTCCTCCTTTGGCTATAAGCGATGCTGAACACTCCGACGAATTGTCAAACATGGTGTGGAATGCCAACAACGATGATCAGGCACTGAATGAGAGTGGAAACACCAACAATATCTCCCAGTCCTCACAACAGGTTTCACCAAGCAACAAAAATGTGTTGAACCTTCATAGCCCCAAGTGTTCATTGGGACTACCCAATGAGTTTGGAGTGAGTGGAGCAGATTATGGACATGGGTACTTCACCATTCAAGAACCAAAATGTGATGATGATGATGGAAACAATGAAAATGACAACATGAACAACAACCATGTTGGAAATTTGGGTTTGGTTAATGAAGTTCCTATGTTTGCTTTGTGGAATGAATGA 1725 0.418 MNNWLGFSLTPHLRIDEDFGRENEDHGRGPYPVMPLHSDGSLCVADSFRHHHSAPPQEWRYDNGIGGGNSSEEGPKLEDFLGCYSNSTIAETKVFCQQNTTQHDQNQNNISKINETMASTFSTNNNTEIETEENNLTNQSSMVQSFHAYNNNPHALITNNSMYKSWLSQTQFSDTKQPSSVEAKNGCNFQSLNLTMSPTVQNKVGAISPLQVNDDSRKRSIVKTQVREPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTHINFPLSTYEKEIEEMKNMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRISSSSTLIAGDLAKRSPKDSAPAAVAGTEDFNPCGSSTPQPPPPLAISDAEHSDELSNMVWNANNDDQALNESGNTNNISQSSQQVSPSNKNVLNLHSPKCSLGLPNEFGVSGADYGHGYFTIQEPKCDDDDGNNENDNMNNNHVGNLGLVNEVPMFALWNE* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0479 574 MobiDBLite consensus disorder prediction 478 504 - -
Lan2g0479 574 PRINTS Ethylene responsive element binding protein signature 245 256 IPR001471 GO:0003700|GO:0006355
Lan2g0479 574 PRINTS Ethylene responsive element binding protein signature 386 406 IPR001471 GO:0003700|GO:0006355
Lan2g0479 574 CDD AP2 345 406 IPR001471 GO:0003700|GO:0006355
Lan2g0479 574 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 36 499 - -
Lan2g0479 574 Pfam AP2 domain 345 396 IPR001471 GO:0003700|GO:0006355
Lan2g0479 574 Pfam AP2 domain 244 302 IPR001471 GO:0003700|GO:0006355
Lan2g0479 574 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 36 499 - -
Lan2g0479 574 SUPERFAMILY DNA-binding domain 345 406 IPR016177 GO:0003677
Lan2g0479 574 CDD AP2 243 312 IPR001471 GO:0003700|GO:0006355
Lan2g0479 574 MobiDBLite consensus disorder prediction 425 461 - -
Lan2g0479 574 ProSiteProfiles AP2/ERF domain profile. 244 310 IPR001471 GO:0003700|GO:0006355
Lan2g0479 574 SUPERFAMILY DNA-binding domain 243 312 IPR016177 GO:0003677
Lan2g0479 574 Gene3D AP2/ERF domain 346 406 IPR036955 GO:0003700|GO:0006355
Lan2g0479 574 Gene3D AP2/ERF domain 243 312 IPR036955 GO:0003700|GO:0006355
Lan2g0479 574 ProSiteProfiles AP2/ERF domain profile. 346 404 IPR001471 GO:0003700|GO:0006355
Lan2g0479 574 SMART rav1_2 346 410 IPR001471 GO:0003700|GO:0006355
Lan2g0479 574 SMART rav1_2 244 316 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0479 Lan-Chr2 5500082 5503847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0479 1 433 AP2-EREBP Transcription Factor Family AT1G72570 54.031 2.48e-142 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lan2g0479 AP2 4.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0479 K09285 - gmx:100805489 813.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0620 9 8966769 8970836 Lan2g0479 2 5500082 5503847 LSH