Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0478 ATGGGAAGAAATCCTTGTTGTTCTAAGGGAGGTTTGAGCAAAGGAGCATGGACAGCTATGGAAGACAAAATCCTCAAAGAATACATTAAGATTCATGGTGAAGGAAAATGGAAACATGTCCCCAAAAGAGCAGGTCTTAAGAGATGTGGGAAAAGTTGCAGGTTAAGATGGTTGAATTATCTTAGACCAGGTATTAAAAGAGGAAATATTACTAATGATGAAGAGGACCTTATAATAAGACTTCACAATCTTCTTGGAAACAGGTGGTCCATAATTGCTGGGAGACTTCCAGGACGAACAGACAATGAAATCAAGAACTATTGGAATACAAATATTAGAAGGAAACTTGAGAATGGTATTATTCCATGCTGCTCCACTAAGAGTGCTGAACCATGCTTATCAAACTCAGTTCAAAAAGAGCACTATTCTAACCCTACAAATAAGGGTTTATGCATGGTCCATACTAAAGGAACAAAATTGACTCAGGTCACTGTCACAAAAGATATTGCTCAACAAAATGAAGGGATCAAGACCAATGATAACAAAATGAAGGGACCATCACTATCATCAGAGAGAGACAATAATGAGCTTTGGGATTTCATGGATGATTTTGAGATTGATGACAATTTCTTTTCTGAGCTACTCAAGATGGACTTACCCAAATCATCTTTGGAAAGTAAGATAATGGAAGAAAATCGTAACCGTAGCATAGTGGATTTAGGCCAGTTTTCTGTTAAATCATCCACTGATGAAGCTCAATTTCTTTGGGGTGATTCAGTTTATGATACAGATTCAGATTTACAACTGATGGAGACTCTTCAGGAGATTGGATTTGATAGGCTTTGA 846 0.3723 MGRNPCCSKGGLSKGAWTAMEDKILKEYIKIHGEGKWKHVPKRAGLKRCGKSCRLRWLNYLRPGIKRGNITNDEEDLIIRLHNLLGNRWSIIAGRLPGRTDNEIKNYWNTNIRRKLENGIIPCCSTKSAEPCLSNSVQKEHYSNPTNKGLCMVHTKGTKLTQVTVTKDIAQQNEGIKTNDNKMKGPSLSSERDNNELWDFMDDFEIDDNFFSELLKMDLPKSSLESKIMEENRNRSIVDLGQFSVKSSTDEAQFLWGDSVYDTDSDLQLMETLQEIGFDRL* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0478 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lan2g0478 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lan2g0478 281 CDD SANT 16 61 IPR001005 -
Lan2g0478 281 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 240 - -
Lan2g0478 281 Gene3D - 70 149 - -
Lan2g0478 281 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lan2g0478 281 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Lan2g0478 281 SMART sant 13 63 IPR001005 -
Lan2g0478 281 SMART sant 66 114 IPR001005 -
Lan2g0478 281 Gene3D - 14 66 - -
Lan2g0478 281 CDD SANT 71 112 IPR001005 -
Lan2g0478 281 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Lan2g0478 281 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 240 - -
Lan2g0478 281 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lan2g0478 281 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0478 Lan-Chr2 5455105 5456991 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0478 1 122 MYB Transcription Factor Family AT4G38620 71.545 1.11e-59 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan2g0478 Myb_DNA-binding 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0478 K09422 - gmx:100809225 354.369