Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0477 ATGGGTAGACTTCCATGTTGTCCCAAAGAGATTGTGAAAGGTGCTTGGTCTACAGAAGAAGATGAAACTCTCTCCAAATATGTCACCATCCATGGAGAAGGGAAATGGCAGAAGCTTGCCCAAAAAGCAGGTTTAAAGAGATGTGGTAAGAGTTGCAGACAAAGATGGTTGAATTATCTGAAGCCTGGTATAAAGAGAGGTGACATCTCTTTGGATGAAGAGGATATGATCATAAGACTTCATCGTCTTCTTGGTAACAGATGGGCTTTGATAGCAAAGAGACTACCAGGACGAACAGACAATGAAATCAAGAACTACTGGAATACCAATTTGGCAAAGAAGTTAGAGAAACAACCTACATTATCATCATGGCCATTATGTGCATCACTTGAACACAATCACAAATGTGAAGAAGTTGAGAAGACAAGACAAACCCATGTAGAACTTGAAGCTCCTCTACCTAGGAGAGTTAAGGATGTCCAATGCAATAAAACTTTGGACAATAAAGGGTATAGTAGTCCTAGTTGCTCAAATAAAAGAGAAGGTAGTAGAAATAGTGATGAAGCTACTAATACTCTAAATGATTTCCTCATTGATATGGATCAAAATAAAGAGCTTATAGAAGATGATTCTAGCTCAAAGGTCCTAGAAATAGAAGACCAAAAGAGGGTAGGCTTAACTTACAGTCTTACCTCAACTACACTTTCCAATCAATATCACATTTTGACAAGTAAATTTGACCCTCTAGAAACATTTTTGGATGTGGAGCTAGAGAGGATGGCTTCCTTTATGGGACAGAATGAAGAGACTTATTGCAATAGAGGACCACTATAA 834 0.3825 MGRLPCCPKEIVKGAWSTEEDETLSKYVTIHGEGKWQKLAQKAGLKRCGKSCRQRWLNYLKPGIKRGDISLDEEDMIIRLHRLLGNRWALIAKRLPGRTDNEIKNYWNTNLAKKLEKQPTLSSWPLCASLEHNHKCEEVEKTRQTHVELEAPLPRRVKDVQCNKTLDNKGYSSPSCSNKREGSRNSDEATNTLNDFLIDMDQNKELIEDDSSSKVLEIEDQKRVGLTYSLTSTTLSNQYHILTSKFDPLETFLDVELERMASFMGQNEETYCNRGPL* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0477 277 SMART sant 12 62 IPR001005 -
Lan2g0477 277 SMART sant 65 113 IPR001005 -
Lan2g0477 277 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Lan2g0477 277 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Lan2g0477 277 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 239 - -
Lan2g0477 277 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 64 IPR017930 -
Lan2g0477 277 MobiDBLite consensus disorder prediction 165 180 - -
Lan2g0477 277 CDD SANT 15 60 IPR001005 -
Lan2g0477 277 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Lan2g0477 277 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Lan2g0477 277 Gene3D - 69 147 - -
Lan2g0477 277 MobiDBLite consensus disorder prediction 164 189 - -
Lan2g0477 277 PANTHER MYB TRANSCRIPTION FACTOR 1 239 - -
Lan2g0477 277 CDD SANT 70 111 IPR001005 -
Lan2g0477 277 Gene3D - 12 65 - -
Lan2g0477 277 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Lan2g0477 277 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0477 Lan-Chr2 5431477 5441737 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0477 5 118 MYB Transcription Factor Family AT3G13540 65.217 4.23e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan2g0477 Myb_DNA-binding 7.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0477 K09422 - gmx:547568 323.939