Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0456 ATGCACAGCTTCTGTTTGATCTTGAAAATGAGTATTCTGCCACAACAATGTCACAAGACTAAGCCACTGACTTTTCAATTTCAAGAACAAGATTCATCTTCGAGTCAGTTGACCGGTCAATCTTATCCTGAAGTCGGTTCAGCACAATCAGGTCAATTTTCTATCCAGTATCGCAATTCCTCTGCTTGTTCAACACTTAGCAAAACTTGGGCTAAGAGTGTGGATGGTTTAGCCAACTCATCTGCCGGGAGTCAGGATTTTGCCTTCCCTCCTTCACAAATGAGTCACAACCAGTTACTTATTCATCATGCCCAGCTAATGGGAATGGCTCCTGTCCGAATCCCTCTGCCACTTGATCTAAGTGAGGAACCGATATATGTGAATGCAAAGCAGTACCATGCTATACTGAGACGTCGACAGTATCGTGCAAAACTCGAGGCACAAAATAAACTTATCAAAGATCGCAAACCATATCTTCATGAGTCCCGCCACCTACATGCATTGAAGAGAGCTAGAGGTTCTGGTGGACGTTTTCTCAATACCAAAAAGCTTCAAGAATCAAAGGCTAATTATGCAGACGATGGTTTAGATGTTTCAGGCTATAATAATACGCTGTTGAATCTGAGTGGAAATATGTCGGAATCTAAACTGCCACAGATGGAAAACTACATAGATGGTGCTTCCACAACCACATGTGCTGATGTCACTAGTGCATCCAGTAGTGATGACATCTTCCAGCAAAAGGGGTCAGACTTCAGATTATTATGTGGTTACCCTTCTCACATTGGAAGGAATATGCAGGGTTACTCGGCTGGTATGGGCGGTGGCGGTGGTCGAAATCAACACCATCTATCTGTCCTTATGTGA 867 0.4337 MHSFCLILKMSILPQQCHKTKPLTFQFQEQDSSSSQLTGQSYPEVGSAQSGQFSIQYRNSSACSTLSKTWAKSVDGLANSSAGSQDFAFPPSQMSHNQLLIHHAQLMGMAPVRIPLPLDLSEEPIYVNAKQYHAILRRRQYRAKLEAQNKLIKDRKPYLHESRHLHALKRARGSGGRFLNTKKLQESKANYADDGLDVSGYNNTLLNLSGNMSESKLPQMENYIDGASTTTCADVTSASSSDDIFQQKGSDFRLLCGYPSHIGRNMQGYSAGMGGGGGRNQHHLSVLM* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0456 288 SMART cbf3 120 181 IPR001289 GO:0003700|GO:0006355
Lan2g0456 288 ProSitePatterns NF-YA/HAP2 subunit signature. 126 146 IPR018362 GO:0003677|GO:0016602
Lan2g0456 288 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 104 253 IPR001289 GO:0003700|GO:0006355
Lan2g0456 288 Gene3D - 121 182 - -
Lan2g0456 288 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 104 253 - -
Lan2g0456 288 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 123 178 IPR001289 GO:0003700|GO:0006355
Lan2g0456 288 PRINTS CCAAT-binding transcription factor subunit B signature 124 146 IPR001289 GO:0003700|GO:0006355
Lan2g0456 288 PRINTS CCAAT-binding transcription factor subunit B signature 155 178 IPR001289 GO:0003700|GO:0006355
Lan2g0456 288 ProSiteProfiles NF-YA/HAP2 family profile. 121 181 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0456 Lan-Chr2 5011778 5016574 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0456 14 286 CCAAT-HAP2 Transcription Factor Family AT1G17590 43.151 3.40e-50 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lan2g0456 CBFB_NFYA 1.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0456 K08064 - gmx:100500765 388.652