Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0455 ATGGACTCGAAAGCACAGTATAATCCTCGCACCGTTGAAGAAGTTTTTAGGGATTTCAAAGGCCGAAGAGCTGGTCTAATCAAAGCTCTCACAATCGATGTTGAAGAGTTCTACAGTCAATGTGATCCAGAGAAGGAGAATTTGTGCTTATACGGCTTTCCTAGTGAGCAGTGGGAAGTAAATTTACCTGCTGAAGAAGTTCCGCCAGAGCTTCCTGAGCCTGTCCTCGGCATTAACTTTGCTAGGGATGGCATGCAAGAAAAAGACTGGTTATCTTTAGTTGCTGTCCACAGTGATGCATGGTTACTTGCTATTGCCTTCTATTTTGGTGCCAGATTTGGGTTTGACAAGGCTGACAGGAAACGCCTGTTCAATATGATTAATGAACTGCCATCAATATATGAAGTTGTTACTGGTGCAGCAAAGAAGCAAGTTAAGGAGAAGTCTTCAGTTTCAAACCAAAGCGGCAGCAAATCTAAGTCCAGCTCTAAAACACATGCTCCAGAATCTCAGGCTAGACAGACAAAGGCCGTACCCTTACCATCAAAAGACGAGGACGAGGATGATGATGATGATGATCTGGACGATGAAGATGAAGAAGAACACGAAGAGACCTTGTGTGGTGCATGTGGTGAAAATTATGGCACCGATGAATTCTGGATTTGCTGTGACATCTGCGAGAAGTGGTTCCATGGGAAATGTGTGAAGATCACCCCGGCTAGGGCAGATCATATCAAACAATACAAGTGCCCATCATGCAGTAACAAGAGAGCTCGCCCTTGA 783 0.4457 MDSKAQYNPRTVEEVFRDFKGRRAGLIKALTIDVEEFYSQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDAWLLAIAFYFGARFGFDKADRKRLFNMINELPSIYEVVTGAAKKQVKEKSSVSNQSGSKSKSSSKTHAPESQARQTKAVPLPSKDEDEDDDDDDLDDEDEEEHEETLCGACGENYGTDEFWICCDICEKWFHGKCVKITPARADHIKQYKCPSCSNKRARP* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0455 260 MobiDBLite consensus disorder prediction 184 202 - -
Lan2g0455 260 SUPERFAMILY FYVE/PHD zinc finger 196 257 IPR011011 -
Lan2g0455 260 ProSitePatterns Zinc finger PHD-type signature. 207 253 IPR019786 -
Lan2g0455 260 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 255 IPR013083 -
Lan2g0455 260 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR 6 260 - -
Lan2g0455 260 MobiDBLite consensus disorder prediction 145 177 - -
Lan2g0455 260 ProSiteProfiles Zinc finger PHD-type profile. 204 256 IPR019787 -
Lan2g0455 260 MobiDBLite consensus disorder prediction 145 202 - -
Lan2g0455 260 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Lan2g0455 260 PANTHER CPG BINDING PROTEIN 6 260 IPR045104 GO:0006355|GO:0042393
Lan2g0455 260 SMART PHD_3 206 254 IPR001965 -
Lan2g0455 260 CDD PHD_AL_plant 206 256 IPR044104 -
Lan2g0455 260 Pfam PHD-finger 207 256 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0455 Lan-Chr2 5003557 5009025 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0455 5 259 Alfin-like Transcription Factor Family AT3G42790 70.196 1.81e-121 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Lan2g0455 Alfin 3.6e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0455 - - gmx:100794662 437.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g2156 6 32000550 32003730 Lan2g0455 2 5003557 5009025 PCT
Lan10g0301 10 1977703 1981440 Lan2g0455 2 5003557 5009025 PCT
Lan3g0241 3 1567680 1571105 Lan2g0455 2 5003557 5009025 PCT
Lan2g0455 2 5003557 5009025 Lan6g2156 6 32000550 32003730 PCT
Lan2g0455 2 5003557 5009025 Lan10g0301 10 1977703 1981440 PCT
Lan2g0455 2 5003557 5009025 Lan3g0241 3 1567680 1571105 PCT