Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0425 ATGGAATACTTTGTCGGTGGCTATTTCGGTAACGGAGGTAACCAATTCTCGCCGGAGAAGCCAAAATCCGGCGAGCCTTTTGCCGTCGACGACCTCCTCGACTTCTCCAACGCCGACGCTATTATGTCCGACGGTTTCTTCGACAATGCCACCGGTAACTCCAACGAGTCCTCCACCGTCGCCGCTCCCGTTGACAGCGGTAATTCCACAATTTCCGGCACCATTGTCCCCTGCGCGTTTGCCGCCGGCGATTCTCAATTCTCCGGTAGTGAACTCTGTGTTCCGTATGATGATATGGCTGAATTGGAATGGCTCTCAAACTTTGTGGAAGATTCATTCTCTGCTGAGGAAGAGTTAAAAACCCTCCAACTTCTCTCCGGAGGTGCCACCGTTTCCTTCACCACCACCACTGCAAAACCAAACACATCGGATTCATCCTCCTCCGATAATGACACATCACGAAACACACCATTTCTCCACTCGGAAACCCCACTCCCAGGCAAAGCAAGAAGCAAGCGCTCACGTGCTGCACCAGGCGACTGGTCCACGCGCTTGGTGCATCTCGTGAAGCCACCAAAAATAAAGAAGGAAGTGTTATTAAACTCGAACGAAAACAACAATAATAATGTCGAAAGTTGTGGAAGGAAGTGTTTGCATTGTGGTGCAGATAAAACACCACAATGGAGAACTGGGCCTATGGGCCCAAAGACATTGTGCAATGCATGTGGTGTGAGGTTTAAGTCCGGGAGGTTGGTGCCAGAATATCGACCAGTAGCGAGTCCAACGTTTGTGTCAACAAAGCATTCGAATTCTCATAGGAAGGTTATGGAATTGAGAAGACAAAAAGAGGTTCAGCGACACCATGTGCATCACCAACATCAACAATTGATTAGTCAAAGTTCTATTTTTGGAGTATCCAACCATGGAGATGATTACTTGATTAATCACCATCCTCATCATCAAAATTGTGCGCCAGAGTTTAGAAATGTTATCCAGTGA 999 0.4775 MEYFVGGYFGNGGNQFSPEKPKSGEPFAVDDLLDFSNADAIMSDGFFDNATGNSNESSTVAAPVDSGNSTISGTIVPCAFAAGDSQFSGSELCVPYDDMAELEWLSNFVEDSFSAEEELKTLQLLSGGATVSFTTTTAKPNTSDSSSSDNDTSRNTPFLHSETPLPGKARSKRSRAAPGDWSTRLVHLVKPPKIKKEVLLNSNENNNNNVESCGRKCLHCGADKTPQWRTGPMGPKTLCNACGVRFKSGRLVPEYRPVASPTFVSTKHSNSHRKVMELRRQKEVQRHHVHHQHQQLISQSSIFGVSNHGDDYLINHHPHHQNCAPEFRNVIQ* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0425 332 CDD ZnF_GATA 216 263 IPR000679 GO:0006355|GO:0043565
Lan2g0425 332 Gene3D - 212 262 IPR013088 GO:0006355|GO:0008270
Lan2g0425 332 MobiDBLite consensus disorder prediction 133 160 - -
Lan2g0425 332 SMART GATA_3 211 261 IPR000679 GO:0006355|GO:0043565
Lan2g0425 332 ProSiteProfiles GATA-type zinc finger domain profile. 211 247 IPR000679 GO:0006355|GO:0043565
Lan2g0425 332 PIRSF Txn_fac_GATA_plant 14 305 IPR016679 GO:0003677|GO:0005634|GO:0045893
Lan2g0425 332 Pfam GATA zinc finger 217 250 IPR000679 GO:0006355|GO:0043565
Lan2g0425 332 PANTHER GATA TRANSCRIPTION FACTOR 2 331 - -
Lan2g0425 332 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 213 275 - -
Lan2g0425 332 MobiDBLite consensus disorder prediction 133 180 - -
Lan2g0425 332 PANTHER GATA TRANSCRIPTION FACTOR 9 2 331 - -
Lan2g0425 332 ProSitePatterns GATA-type zinc finger domain. 217 242 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0425 Lan-Chr2 4494221 4496411 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0425 27 331 C2C2-Gata Transcription Factor Family AT4G32890 46.226 1.43e-76 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lan2g0425 GATA 1.8e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0425 - - gmx:100776605 416.772