Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0394 ATGGAGCCTCGAATTGGAAACAAGTTCCGTCTTGGTCGAAAAATCGGTAGCGGATCCTTCGGAGAGATCTATCTTGGTACTAATCTTCAGTCAAATGAAGAGGTTGCGATTAAGCTTGAAAGTGTCAAAACCAAGCACCCTCAATTGTTGTATGAATCAAAGCTGTATAAAATACTGCAAGGAGGAACTGGGATCCCAAATTTGAAATGGTTTGGTGTTGATGGAGAATACAATGTCCTTGTGATGGATTTGCTGGGACCTAGTCTTGAGGATTTATTCAATTTCTGTAGTCGTAAATTGTCCCTCAAAACAGTTCTCATGCTTGCTGATCAGATGATAAATAGAGTTGAATTTGTTCATTCCAAATCATTTTTACACCGGGACATCAAGCCAGACAACTTCCTCATGGGTTTAGGGAGGCGTGCGAATCAAGTGTACATGATTGACTTTGGTCTTGCAAAGAAATACAGGGACACCTCTACACATCAGCATATTCCTTATAGAGAGAATAAGAATTTAACTGGGACTGCTAGGTATGCTAGTATGAATACTCATCTTGGAATTGAGCAAAGCCGCAGGGATGATTTAGAGTCACTTGGATACGTTCTTATGTATTTTTTAAGAGGAAGTCTGCCTTGGCAGGGATTAAAAGCAGGTAATAAGAAGCAGAAGTATGAGAAAATAAGCGAGAAAAAAGTTTCAACTTCTATTGAGTCTCTCTGTCGTGGCTATCCCTCAGAATTTCTATCATACTTCCATTACTGTCGATCACTGAGGTTTGATGATAAACCAGATTATGCTTATTTGAAAAGACTTTTCCGGGACCTTTTCATCCGTGAAGGATTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAACAATCTCAAATTGGCACTCCTACCCGTCCTATTGGTTCTGCTGCTGGACCAAGTTCTGGCATGCCACCAGCTGTTGCAAATGCTGATGGACAGCCAGGTGGGGAAGATGGCAGGCAGACTGGTTGGCTTTCATCAGATCCTACTCGTAGGAGAAACTCCGGACCTATTGCTAATGATGTACTTTTATCTAGACAAAAAGCCCCACTTATAAATGAATCAACTGTATCTAAAGATGTTATGTTGTCTAGTTCCAATTTCTTCCAGCCAAGTGGATCTGCTAGGCGACGTGTTGTCTCTGGGGGCCATGATGCAGTCGTTGGCAGTGAGACTGAGCCCTCTCGTCCTCCCATCATGGATTCAAGTCAGGGAGCACTTCGTAAAATCTCTGGTGCCCAAAGAAGTTCTTCTATCTTGCCATCCGATCACAACCGAGTAGCCTCTGGCAGAAACACACCGAACATAATGAATTTGGAAACAACTCTAAAAGGTATCGAGATTCGAGACCCTTCATTTCAATGA 1407 0.4193 MEPRIGNKFRLGRKIGSGSFGEIYLGTNLQSNEEVAIKLESVKTKHPQLLYESKLYKILQGGTGIPNLKWFGVDGEYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYMIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGNKKQKYEKISEKKVSTSIESLCRGYPSEFLSYFHYCRSLRFDDKPDYAYLKRLFRDLFIREGFQFDYVFDWTILKYQQSQIGTPTRPIGSAAGPSSGMPPAVANADGQPGGEDGRQTGWLSSDPTRRRNSGPIANDVLLSRQKAPLINESTVSKDVMLSSSNFFQPSGSARRRVVSGGHDAVVGSETEPSRPPIMDSSQGALRKISGAQRSSSILPSDHNRVASGRNTPNIMNLETTLKGIEIRDPSFQ* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0394 468 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Lan2g0394 468 MobiDBLite consensus disorder prediction 304 356 - -
Lan2g0394 468 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Lan2g0394 468 Pfam Protein kinase domain 10 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan2g0394 468 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan2g0394 468 Gene3D Transferase(Phosphotransferase) domain 1 1 308 - -
Lan2g0394 468 PANTHER CASEIN KINASE-RELATED 1 450 - -
Lan2g0394 468 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Lan2g0394 468 PANTHER CASEIN KINASE 1-LIKE PROTEIN 2 1 450 IPR030509 GO:0004672|GO:0005524
Lan2g0394 468 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan2g0394 468 CDD STKc_CK1_delta_epsilon 8 282 - -
Lan2g0394 468 MobiDBLite consensus disorder prediction 428 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0394 Lan-Chr2 3987097 3992847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0394 8 229 MAP Kinase Kinase Kinase AT1G54960 26.809 6.08e-13 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Lan2g0394 Pkinase 2.4e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0394 K02218 - gmx:100778165 791.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g2149 6 31946262 31951698 Lan2g0394 2 3987097 3992847 PCT