LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan2g0394	ATGGAGCCTCGAATTGGAAACAAGTTCCGTCTTGGTCGAAAAATCGGTAGCGGATCCTTCGGAGAGATCTATCTTGGTACTAATCTTCAGTCAAATGAAGAGGTTGCGATTAAGCTTGAAAGTGTCAAAACCAAGCACCCTCAATTGTTGTATGAATCAAAGCTGTATAAAATACTGCAAGGAGGAACTGGGATCCCAAATTTGAAATGGTTTGGTGTTGATGGAGAATACAATGTCCTTGTGATGGATTTGCTGGGACCTAGTCTTGAGGATTTATTCAATTTCTGTAGTCGTAAATTGTCCCTCAAAACAGTTCTCATGCTTGCTGATCAGATGATAAATAGAGTTGAATTTGTTCATTCCAAATCATTTTTACACCGGGACATCAAGCCAGACAACTTCCTCATGGGTTTAGGGAGGCGTGCGAATCAAGTGTACATGATTGACTTTGGTCTTGCAAAGAAATACAGGGACACCTCTACACATCAGCATATTCCTTATAGAGAGAATAAGAATTTAACTGGGACTGCTAGGTATGCTAGTATGAATACTCATCTTGGAATTGAGCAAAGCCGCAGGGATGATTTAGAGTCACTTGGATACGTTCTTATGTATTTTTTAAGAGGAAGTCTGCCTTGGCAGGGATTAAAAGCAGGTAATAAGAAGCAGAAGTATGAGAAAATAAGCGAGAAAAAAGTTTCAACTTCTATTGAGTCTCTCTGTCGTGGCTATCCCTCAGAATTTCTATCATACTTCCATTACTGTCGATCACTGAGGTTTGATGATAAACCAGATTATGCTTATTTGAAAAGACTTTTCCGGGACCTTTTCATCCGTGAAGGATTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAACAATCTCAAATTGGCACTCCTACCCGTCCTATTGGTTCTGCTGCTGGACCAAGTTCTGGCATGCCACCAGCTGTTGCAAATGCTGATGGACAGCCAGGTGGGGAAGATGGCAGGCAGACTGGTTGGCTTTCATCAGATCCTACTCGTAGGAGAAACTCCGGACCTATTGCTAATGATGTACTTTTATCTAGACAAAAAGCCCCACTTATAAATGAATCAACTGTATCTAAAGATGTTATGTTGTCTAGTTCCAATTTCTTCCAGCCAAGTGGATCTGCTAGGCGACGTGTTGTCTCTGGGGGCCATGATGCAGTCGTTGGCAGTGAGACTGAGCCCTCTCGTCCTCCCATCATGGATTCAAGTCAGGGAGCACTTCGTAAAATCTCTGGTGCCCAAAGAAGTTCTTCTATCTTGCCATCCGATCACAACCGAGTAGCCTCTGGCAGAAACACACCGAACATAATGAATTTGGAAACAACTCTAAAAGGTATCGAGATTCGAGACCCTTCATTTCAATGA	1407	0.4193	MEPRIGNKFRLGRKIGSGSFGEIYLGTNLQSNEEVAIKLESVKTKHPQLLYESKLYKILQGGTGIPNLKWFGVDGEYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYMIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGNKKQKYEKISEKKVSTSIESLCRGYPSEFLSYFHYCRSLRFDDKPDYAYLKRLFRDLFIREGFQFDYVFDWTILKYQQSQIGTPTRPIGSAAGPSSGMPPAVANADGQPGGEDGRQTGWLSSDPTRRRNSGPIANDVLLSRQKAPLINESTVSKDVMLSSSNFFQPSGSARRRVVSGGHDAVVGSETEPSRPPIMDSSQGALRKISGAQRSSSILPSDHNRVASGRNTPNIMNLETTLKGIEIRDPSFQ*	469

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lan2g0394	468	SUPERFAMILY	Protein kinase-like (PK-like)	5	290	IPR011009	-
Lan2g0394	468	MobiDBLite	consensus disorder prediction	304	356	-	-
Lan2g0394	468	ProSitePatterns	Protein kinases ATP-binding region signature.	15	38	IPR017441	GO:0005524
Lan2g0394	468	Pfam	Protein kinase domain	10	226	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Lan2g0394	468	SMART	serkin_6	9	287	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Lan2g0394	468	Gene3D	Transferase(Phosphotransferase) domain 1	1	308	-	-
Lan2g0394	468	PANTHER	CASEIN KINASE-RELATED	1	450	-	-
Lan2g0394	468	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	124	136	IPR008271	GO:0004672\|GO:0006468
Lan2g0394	468	PANTHER	CASEIN KINASE 1-LIKE PROTEIN 2	1	450	IPR030509	GO:0004672\|GO:0005524
Lan2g0394	468	ProSiteProfiles	Protein kinase domain profile.	9	278	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan2g0394	Lan-Chr2	3987097	3992847	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan2g0394	8	229	MAP Kinase Kinase Kinase	AT1G54960	26.809	6.08e-13	69.3

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CK1_CK1	Lan2g0394		Pkinase	2.4e-26	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan2g0394	K02218		-	gmx:100778165	791.186

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lan6g2149	6	31946262	31951698	Lan2g0394	2	3987097	3992847	PCT

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