Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0382 ATGATGGTTATAGATTCATTGACTTCATTGACTTCTGGTCCTACTTCAGAAGCCATTTCTCAAATTATAGATACCATTGGTGAGTTTGTATATTATGCTGCTGATGTACTTGTGAAGAAGGATATTTTTAAGGAACTTGCAACTTACTTGGACCGAATTACACCGATCTTAAAAGAATTGAGGAAAGGAAGAGTCAGTGATTCTGAGACATTCAATCATGTGGTTGAGGTTCTGAATCGGGAAACTAATGAAGCAAAGAAACTTGCTCAAGAATGCAGCAAGAAGAGCAAGGTATATCTCCTAATGAATACCAGATCCATTGTTGATCGTATAAAAAGATACACAAGTGAAATCAGCAGAGCTATTAGTCTTCTTCCTTTGGCTGCATCGGATCTTTCTTTCGGAATAGTTGAAGAAATTCAAAAGCTATGTGACAATATGAAGACAGCTGAGTTTAAAGCAGCTGTAACAGAAGAAGAAATTTTAGATAAAATTGAGTCAGGGATATTGGAAAAGAATGTTGATCGCTCCTATGCAAATAATTTGATGGTTCTCATTGCGGAGGCTGTTGGAATTGCAAATGAGGGGTCAACAATGAAGAAGGAACTTGAAGAGTTCAAGAGTGAAATCGAAAATGCGCGGCTAAGGAAGGACCTCGCTGAAGCCATACAAATGGATCAGATCATTGCTTTGTTGGAAAGGGCTGATGCAGCCTCGTCTCCTAAGGAAAAGGAAGTCAAGTACTTTGCTAAGCGCAAATCTTTGGGAAGTCAGCCCTTGGAGCCTTTAAAGTCTTTTGTTTGCCCCATTACGCGGGATGTTATGGTCGATCCTGTAGAAACTTCATCGGGGCAAACATTTGAGAGAAGTGCAATAGAGAAGTGGTTCGCAGATGGAAACAATAAGTGTCCTCTGACCTTGATTCCTTTAGACACGTCGATTTTGAGACCTAACAAAACCTTAAAACAATCAATAGAAGAATGGAAGAACAGAAATACAATGATCAGAATTGGTTCGATGAGAGAAAAAATACAGCCTGGAGATGATGATGAAGTACTGCTATGTCTGAGAATTATTCAAGAATTGTGTGAACAGAGTGACCAGCACGTAGAATGGGTAATACTGGAGAATTACATACCAGCTCTTATCAAAATTCTTGCTTCAAAAAACCGTGATGTAAGGAACACTGCCCTTGCCATCCTATGCATGCTGGCGAAGGATAGTGAAGATGCTAAGGAAAGAATCGCAAATGTGGATAAAGCAATTGAGTCTGTAGTTCATTCACTTGGACGTCGATCAGAGGAAAGGAAGTTGGGAGTGGCATTACTTCTCGAGTTATCCAAAAATGATGGGTTAAGGGAACACATCGGAAAAGTTCAAGGTTGCATACTACTATTGGTGCCTATGTCTAGCAGTGATGACAATCAAGCTGCCAGAGATGCAACAGAGCTACTCGAGAAACTTTCCTACTCTGATCAGAATGTTATACAGATGGCAAAGACAAATTATTTCAAGCACTTATTGCAGCGTCTCTCCACAGGACCGGACGATGTGAAGATGACTATGGCGACAACGTTAGCAGAAATGGAGTTATCTGACCAAAATAAGGAGTCCTTGTTTGAGTGTGGTATACTGCCTCCTCTTCTTCACTTGGTCTCACATAATGATGTTCAGATGAAAACAATGGCCCTTAAAGCTCTTCAGAATGTATCCAGTTTAAAGAAGAATGGGCTTGAAATGATTCGACAAGGTGCAGCACGCCCATTGCTTGACATTCTTTTCAGGCAAAGCTTATCTTCAAGTTTGCGGGAACACGTAGCACCCGTTATTATGCAACTTGCTTCATCAACCATCTCTCAAAATGTTGAGACACCAGTATTACTATTAGAATCTGATGATGATGTTTTTAACCTTTTCTCTCTTATTAACTACACTGGTTCTGACGATGTGCGACAATACACTATCCAGACATTTTATGCCTTGTGTCAGTCACCGTCAGCTTCATATATCAGGACCAAGCTAAGAGAGTACCCAGATGTCCGAGCATTGGTTAAGTTGTTTGAGAATGAAAACCTAAATCTACGAGCAAGTGCCGTAAAGCTGTTTTCTTGCCTAGCAGAGAGTTGTGATGAAGCCATCATAGTGGAGAATGTCAACGAGAAGTGCATCAAGACTTTACTCCAGATCCTGAAATCTTCATCTGATGAAGAGGAAATTGTTTCTGCTATGGGAATAATATGCTATCTGCCAGAAATTCAACAGATCACACAATGGCTCTTGGATGCTGGTGCACTATCGATCATTTACAATTGTATCCATGACGGGGACAGAGATCAGAAGAGTAAATTGGTAGAGAATTCTGCTGGTGCGCTACGTCGTTTTACAGTTACAGAAAACTTGGAATGGCAAAGGAGGACTGCTGAAACTGGGATTATAACTGTTTTAGTACAGCTTCTCGAAAGTGGAACAGCGATAACAAAACAACAAGCAGCATTGTCTCTTACTCAATTTTCTCGAAGTTCAAATCTTCTGAGCAGGCCACTGCCCAAGCGCAAGGGACTTTGGTGCTTCGCGCCTCCAGCAAATCTCGGATGTGTAGTTCATGGAGGAATTTGTGCTGTCAAATCATCATTTTGCCTTTTGGAGGCCGATGCGTTGGAACCACTAACAAGGACTCTTGGAGAGACTAATCCCGGAGTTTGTGAGGCTTCTTTAGATGCCCTTCTAACATTAATTGAAGGTGAAAGACTGCAGAATGGCAGTAAAGTGCTTGCTAATGCAAACGCGATACCGTCAATAATAAGACTTCTCGGTTCGCCTTCTCTTGGATTGCAGGAAAAGTCTCTACATGCTTTGGAAAGGATTTTTCGGTTACCCGAGTTCACACAAAGATATGGAACCTCAGCTCAAATACCTTTAGTTGACTTAACTCAGAGGGGTATTGGAAGCACAAGATCCATGGCTGCAAGAATATTGGCACATCTGAATGTGCTTCATGATCAATCTTCATATTTTTAA 3018 0.4099 MMVIDSLTSLTSGPTSEAISQIIDTIGEFVYYAADVLVKKDIFKELATYLDRITPILKELRKGRVSDSETFNHVVEVLNRETNEAKKLAQECSKKSKVYLLMNTRSIVDRIKRYTSEISRAISLLPLAASDLSFGIVEEIQKLCDNMKTAEFKAAVTEEEILDKIESGILEKNVDRSYANNLMVLIAEAVGIANEGSTMKKELEEFKSEIENARLRKDLAEAIQMDQIIALLERADAASSPKEKEVKYFAKRKSLGSQPLEPLKSFVCPITRDVMVDPVETSSGQTFERSAIEKWFADGNNKCPLTLIPLDTSILRPNKTLKQSIEEWKNRNTMIRIGSMREKIQPGDDDEVLLCLRIIQELCEQSDQHVEWVILENYIPALIKILASKNRDVRNTALAILCMLAKDSEDAKERIANVDKAIESVVHSLGRRSEERKLGVALLLELSKNDGLREHIGKVQGCILLLVPMSSSDDNQAARDATELLEKLSYSDQNVIQMAKTNYFKHLLQRLSTGPDDVKMTMATTLAEMELSDQNKESLFECGILPPLLHLVSHNDVQMKTMALKALQNVSSLKKNGLEMIRQGAARPLLDILFRQSLSSSLREHVAPVIMQLASSTISQNVETPVLLLESDDDVFNLFSLINYTGSDDVRQYTIQTFYALCQSPSASYIRTKLREYPDVRALVKLFENENLNLRASAVKLFSCLAESCDEAIIVENVNEKCIKTLLQILKSSSDEEEIVSAMGIICYLPEIQQITQWLLDAGALSIIYNCIHDGDRDQKSKLVENSAGALRRFTVTENLEWQRRTAETGIITVLVQLLESGTAITKQQAALSLTQFSRSSNLLSRPLPKRKGLWCFAPPANLGCVVHGGICAVKSSFCLLEADALEPLTRTLGETNPGVCEASLDALLTLIEGERLQNGSKVLANANAIPSIIRLLGSPSLGLQEKSLHALERIFRLPEFTQRYGTSAQIPLVDLTQRGIGSTRSMAARILAHLNVLHDQSSYF* 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0382 1005 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 377 412 IPR000225 GO:0005515
Lan2g0382 1005 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 543 585 IPR000225 GO:0005515
Lan2g0382 1005 SUPERFAMILY RING/U-box 253 337 - -
Lan2g0382 1005 Gene3D - 870 1003 IPR011989 -
Lan2g0382 1005 SUPERFAMILY ARM repeat 326 1001 IPR016024 -
Lan2g0382 1005 Coils Coil 75 95 - -
Lan2g0382 1005 Pfam U-box domain 266 332 IPR003613 GO:0004842|GO:0016567
Lan2g0382 1005 SMART arm_5 532 572 IPR000225 GO:0005515
Lan2g0382 1005 SMART arm_5 917 957 IPR000225 GO:0005515
Lan2g0382 1005 SMART arm_5 366 406 IPR000225 GO:0005515
Lan2g0382 1005 SMART arm_5 752 796 IPR000225 GO:0005515
Lan2g0382 1005 SMART arm_5 873 913 IPR000225 GO:0005515
Lan2g0382 1005 SMART arm_5 709 748 IPR000225 GO:0005515
Lan2g0382 1005 Pfam Armadillo/beta-catenin-like repeat 532 571 IPR000225 GO:0005515
Lan2g0382 1005 SMART Ubox_2 265 328 IPR003613 GO:0004842|GO:0016567
Lan2g0382 1005 Gene3D - 622 851 IPR011989 -
Lan2g0382 1005 Gene3D - 435 621 IPR011989 -
Lan2g0382 1005 Gene3D - 15 130 IPR036537 GO:0007166
Lan2g0382 1005 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 16 1005 - -
Lan2g0382 1005 CDD RING-Ubox_PUB 266 306 IPR045210 -
Lan2g0382 1005 Gene3D - 339 434 IPR011989 -
Lan2g0382 1005 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 338 IPR013083 -
Lan2g0382 1005 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 16 1005 - -
Lan2g0382 1005 ProSiteProfiles U-box domain profile. 261 335 IPR003613 GO:0004842|GO:0016567
Lan2g0382 1005 Coils Coil 196 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0382 Lan-Chr2 3762140 3769222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0382 264 1005 U-box Gene Family AT1G76390 28.679 2.18e-62 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0382 - - gmx:100799969 1400.19