Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0381 ATGAGGCCAGTTTTCGTAGGGAACTTTGAATTTGATACCCGTCAATCTGAGCTTGAACGTTTGTTCTCAAAGTATGGAAGGGTTGAACGTGTTGATATCAAATCTGGTTATGCTTTTGTCTATTATGAGGATGAGCGAGATGCTGAAGATGCAATTCGTGTGCTTGACAATTTTCCATTTGGTTATGAGAAGCGAAGGCTGTCTGTGGAGTGGGCTAGGGGTGAACGTGGCCGCCATCCTAATGGCGCAAGGGAAAACCAGAGACCCACAAGAACCCTATTTGTTATCAATTTTGACCCAATTCGTACTAGAGATCGTGATATAGAAAGACACTTTGAACCTTATGGGAAGATTCATCATGTTCGAATTCGTCGGAATTTTGCTTTTGTGCAGTTCGAAACACAAGAAGATGCTACTAAAGCTCTTGAATGTACACATATGAGTAAGATATTGGACAGGGTGGTGTCTGTGGAGTATGCTCTAAGGGATGACAGTGAGAGGGGTGACAGATATCATGACAGTCCTAGAAGAGGTGGTTATGGTAGATCACCCAGTCCAGTTTATCGGAGGCGATCAAGTCCTGACTACGGTCGTCCACGCAGCCCTGTGTATGACAGGCGTAGGAGCCCTGATTATGGTAGACCTAGGAGCCCTGATTATGGCAGGCCTAGGAGCCCTGATCATGTCAGGCCTAGGAGCCCTGATCATGTCAGGCCTAGGAGCCCTGAACATGGTAGATACCGCAGTCGTTCACCGATCCGAAGGTCAAGAACATAA 777 0.4646 MRPVFVGNFEFDTRQSELERLFSKYGRVERVDIKSGYAFVYYEDERDAEDAIRVLDNFPFGYEKRRLSVEWARGERGRHPNGARENQRPTRTLFVINFDPIRTRDRDIERHFEPYGKIHHVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDSERGDRYHDSPRRGGYGRSPSPVYRRRSSPDYGRPRSPVYDRRRSPDYGRPRSPDYGRPRSPDHVRPRSPDHVRPRSPEHGRYRSRSPIRRSRT* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0381 258 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 162 IPR000504 GO:0003723
Lan2g0381 258 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 155 IPR000504 GO:0003723
Lan2g0381 258 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 60 IPR000504 GO:0003723
Lan2g0381 258 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Lan2g0381 258 MobiDBLite consensus disorder prediction 165 258 - -
Lan2g0381 258 SUPERFAMILY RNA-binding domain, RBD 2 103 IPR035979 GO:0003676
Lan2g0381 258 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 4 223 - -
Lan2g0381 258 SMART rrm1_1 92 158 IPR000504 GO:0003723
Lan2g0381 258 SMART rrm1_1 3 70 IPR000504 GO:0003723
Lan2g0381 258 MobiDBLite consensus disorder prediction 193 249 - -
Lan2g0381 258 SUPERFAMILY RNA-binding domain, RBD 81 183 IPR035979 GO:0003676
Lan2g0381 258 Gene3D - 82 174 IPR012677 -
Lan2g0381 258 Gene3D - 1 81 IPR012677 -
Lan2g0381 258 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RS31-RELATED 4 223 IPR029537 GO:0000398|GO:0005681
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0381 Lan-Chr2 3758259 3761060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0381 4 153 Eukaryotic Initiation Factors Gene Family AT4G34110 25.000 8.59e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0381 K12893 - gmx:100797709 408.683