Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0375 ATGGCACATCTGGGAAATACTGAAGCAGACACAGGTTTTGGAGATGATGATATATACACACAACTATGGAAGTTATGTGCAGGACCTTTGGTTAATGTTCCTCATGCTGAAGAGAGAGTTTATTATTTTCCTCAAGGTCACATGGAACAATTGCAAGCATCAACGAATCAAGAATTGAACCAACAAATGCCCCATTTCAATCTTCCATCCAAGATTCTCTGTCGTGTTATGCACATTCAGTTGTTGGCTGAACAAGAAACTGATGAAGTTTATGCTCGTATCACTTTACTTCCAGAATCAGATCAAAATGAACCTACAAGTCCTGATCCATGTCCACCTGAGACTCAGAAACAGATCTTTCACTCTTTTAGTAAGATATTAACTGCATCTGATACTAGCACTCATGGAGGATTTTCGGTTCTGCGTCGGCATGCTACTGAGTGCTTGCCTCAATTGGACATGACACAACAAACTCCAACCCAAGAGTTAGCAGCCAAGGATCTTCATGGCTTTGAGTGGAAGTTTAAGCATATTTTCAGAGGTCAACCAAGGAGGCACTTGCTTACAACTGGATGGAGTACATTTGTCACATCGAAAAGATTGGTTGCCGGAGATGCTTTTGTGTTCTTAAGGGGAGAAAATGGTGAACTGCGAGTTGGTGTTCGGCGTCTTGCTCGGCAGCAGAGTCTGATGCCTTCATCTGTGATATCAAGCCAGAGCATGCATCTTGGAGTGCTTGCCACTGCTTCCCACGCTCTTATGACTCGTACCATGTTTGTGGTTTATTACAAACCAAGGACTAGCCAGTTTATTATCGGTCTGAACAAATATTTAGAGGCAATTAAGAACAAGTTTTCTATTGGCATGCGCTTCAAGATGAGATTTGAGGTGGAGGACTCGCCTGAAAGAAGGTTTTCCGGTACTATTGTTGGTGTTGGGGATGTATCTGCAGGATGGTCAAATTCTCTGTGGCGATCAATGAAGGTTCAATGGGATGAACCGGCAACAATTCCTAGGCCAGAGAGGGTTTCTGCTTGGGATTTGGAGCATTTTGTACCTTCTACTGCTGTAAATATCACTCAGCCTGTGGTGAAGAGCAAAAGATCTAGGCCTTCTGATGTTCAATCTTCTGAAATTACTGCTAATTCTCCTGCTTCAACTTTCTGGTATCACGGATCATCCTTGTCACATGAACCTACACAATTTGGTGGTGTTGGCGAAGTTCGAAGCAACGAAAACCACGCCATGTGGTCTTTGAGGCAGAAGGAAATTAATGGCAAACCAATGAATACCAATTCCAGCACCTCTAGAGTCTGCATGGAAGGACTATGGCCATCTTCTCCTCATTTAAATGTCTCTTCAAACTATTTTCCTGAGCTCAAAAACAACAAATCTGTTGTGACGACACAATCATCTTGCGTCATTAATCCCCCAGCTTCATGTAGGCCTAACAATGGTTCGATGCATGACGAAGTTGAAAATGGTAAAACGACGGAGAATCACACGGATATCTGGGTATTTGGAGTTAATTTGAGTAGCAATCTCACTAATGTTGAATTTCCTGAGAAGGAACTTGAATGTCCAGCTATTGTTCCAAGTGATCCCAAAGATTTTGTTTCTATTGGTGCATGTGAAAGTGCGAATGGTCAGAATCTCAATAATTCACTGTCCACTAAGGAGCAGAAGCAAATTATTTCTGGTGCATCACCAAATGAGAGGCAGAACAAGCAGACCTCTGTACCATCCTCGAGGACTCGTACTAAGGTGCAAATGCAAGGTGTTGCGGTTGGTCGCGCTGTTGATTTGACCATGTTGAGTGGTTATTGTGATCTAATAGATGAACTTGAGAAATTATTTGATATTAAGGGAGAGCTTCATTCCAAAAACAAATGGTTGATTACTTATACCGACGATGAAAATGACACGATGCAAGTTGGTGATGATCGATGGCCGGAATTCTGTAACATGGTGAAGAGGATTTTCATTATTCCAAAGGAAGATGTGAAGAAGATAAAATGCAAGGATTCGGCCACTTCATCGGAGATTGAAGAGACTCTGTTGAGCACAGAATAG 2073 0.4221 MAHLGNTEADTGFGDDDIYTQLWKLCAGPLVNVPHAEERVYYFPQGHMEQLQASTNQELNQQMPHFNLPSKILCRVMHIQLLAEQETDEVYARITLLPESDQNEPTSPDPCPPETQKQIFHSFSKILTASDTSTHGGFSVLRRHATECLPQLDMTQQTPTQELAAKDLHGFEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGENGELRVGVRRLARQQSLMPSSVISSQSMHLGVLATASHALMTRTMFVVYYKPRTSQFIIGLNKYLEAIKNKFSIGMRFKMRFEVEDSPERRFSGTIVGVGDVSAGWSNSLWRSMKVQWDEPATIPRPERVSAWDLEHFVPSTAVNITQPVVKSKRSRPSDVQSSEITANSPASTFWYHGSSLSHEPTQFGGVGEVRSNENHAMWSLRQKEINGKPMNTNSSTSRVCMEGLWPSSPHLNVSSNYFPELKNNKSVVTTQSSCVINPPASCRPNNGSMHDEVENGKTTENHTDIWVFGVNLSSNLTNVEFPEKELECPAIVPSDPKDFVSIGACESANGQNLNNSLSTKEQKQIISGASPNERQNKQTSVPSSRTRTKVQMQGVAVGRAVDLTMLSGYCDLIDELEKLFDIKGELHSKNKWLITYTDDENDTMQVGDDRWPEFCNMVKRIFIIPKEDVKKIKCKDSATSSEIEETLLSTE* 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0375 690 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 7 677 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lan2g0375 690 SUPERFAMILY DNA-binding pseudobarrel domain 114 252 IPR015300 -
Lan2g0375 690 SUPERFAMILY CAD & PB1 domains 579 660 - -
Lan2g0375 690 Gene3D - 580 672 - -
Lan2g0375 690 MobiDBLite consensus disorder prediction 550 587 - -
Lan2g0375 690 Pfam B3 DNA binding domain 123 223 IPR003340 GO:0003677
Lan2g0375 690 Gene3D - 284 356 - -
Lan2g0375 690 ProSiteProfiles B3 DNA-binding domain profile. 123 225 IPR003340 GO:0003677
Lan2g0375 690 PANTHER AUXIN RESPONSE FACTOR 11 7 677 - -
Lan2g0375 690 CDD B3_DNA 121 223 IPR003340 GO:0003677
Lan2g0375 690 Pfam Auxin response factor 249 328 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lan2g0375 690 ProSiteProfiles PB1 domain profile. 584 676 IPR000270 GO:0005515
Lan2g0375 690 SMART B3_2 123 225 IPR003340 GO:0003677
Lan2g0375 690 Gene3D - 120 224 IPR015300 -
Lan2g0375 690 Pfam AUX/IAA family 557 620 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0375 Lan-Chr2 3700952 3711026 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0375 14 671 B3 DNA Binding Superfamily AT4G23980 56.138 0.0 666
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lan2g0375 B3 1.8e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0375 K14486 - gmx:100795763 939.873
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0799 4 10040796 10044889 Lan2g0375 2 3700952 3711026 LSH