Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0373 ATGGACTCCTCGTCCGATCAACGGTGCAAGCGTTCCGCCGGCCCTAAGTGGCGGTGCAGCGCCACGGCGTCGCCGGGGAAATCGTACTGCGAAAAGCATTTATTGCAGCAGCGTAAGAATCAAATTGAGAAACACAAAATTCGCGAGAAAAAAGGCGAAGAAGAAAGTAACAATGATAAGGAGAAGAAGAGAAAGAGAAGAACAGTGAAAAACATCGCCGGTGATGATCGGAGTAGCGGATCGGAATTGGAAGCGTTGGAGTTGGAGTTTGGTGCGGAGAAAGGCGCGAGTAGAAGGTCGAAGAAGACGAAGAAATTGATTGATAAAACCGAAGAAAATGAAGAAAGTGCTTCTGGAAAGGGATTGATGAATCTGTATCAGGTGAAGAGGGGTTCAAAACCTAAAAATGGAGCTCAAGATGCTAAAAAAGAGGGTGGAAGCTTGATGTGTCATCAGTGCCAGCGAAATGACAAGAGTGGTGTTGTCAATTGCTCGAGTTGCAACAGAAGACGCTATTGTTACGAATGCATCAAGAACTGGTACCCAGGAAAAACCCGTGAGGAATTTGAGACTGTATGTCCATGTTGCTGGGGCAATTGCAACTGCAAAGCATGCTTGCGGGAGGTTCCAGTGCTACCGCGCCCAGAAGTAAATGACAGTGTCAAATTACAACGACTGCTGTACTTACTATGTAAAGCTCTGCCAGTTCTGAGGCATATTCACAGGGAGCAGAACCTCGAATTAGAGATTGAAACCAAAATTAAGGAGTTAGGTAACCAGCTGCAAGAAATTGACATAACAAGAACAAAGTTACATGAACGTGAGCGCATGTACTGTGACAATTGCAATACATCAATAATTGGGCTTTACCGAAGCTGCCCCAACCCCAGTTGCTCTTATGATCTATGTCTCATGTGCTGTCAGGAGCTCAGAAAGGGCTGCCAACCTGGAGGCATAGAAGCTGAAACATCTAATGAACAATTTGCAGGTAGAGCTCGTCATGATTCAACAAGAAATCAGAGTAAAAATGACCATGGTAAAAAATATGGGTGGGAGAGCCAACTGGAACCTACTAATTTTGATTTTCAAGATAACCCGTCCTCTCCCTTCCCTGAATGGGAAGCTAATTGTGATGGTAACATTCCATGCCCTCCGAAACAGCGTGGAGGTTGTGGTACTAAATTTCTTGAACTGAGACGCATTTTCAAAGCTAATTGGGTAGAAAAACTGCTAAATAATGCTGAAGATCTCACTAGAGACTACACCCCACCGAGTGTTGATATTACTGAAGAGTGTTCTTTATGCCAACCAAAGTTGGTTGAAGGAAAAATCAATCTTCAAATCCGGAGAGCAGCTTACAGGAATGGCAGTAATGATAACTTCTTGTATTGCCCAAATGCCCTTGACATTTCTGATGATGAAATTGAGCATTTCCAGAGGCACTGGATGAGGGGAGAACCTGTGGTTGTGAGAAATATTCTGGACAAAACATCTGGTCTTAGTTGGGAACCAATGGTTATGTGGAGGGCTTTGAGAGAAACAGGTTCCAATGTGAAGTTCAAAGAGGAAACACGAAGTGTAACGGTCATTGATTGCCTCGACTGGTGTAGGCTTGAGATTAATATTCACCAATTTTTCAAAGACTACCTAGAGGGTCGAAAGCATAAAAATCACTGGCCAGCAATATTGAAATTGAAAGATTGGCCTTCATCGACCTCTTTTGAAGAACGTTTGCCCAGGCATGGTGCTGAATTCCTTAGTGCACTCCCTTACAGGGACTACACTGATCCAAAATCAGGTCTTTTAAATTTTGCTACTAAACTTCCTGAGAGCTCGCTAAAACCAGATATGGGACCCAAAACATATATTGCTTATGGATTTTCTGAAGAGCTTGGTAGAGGAGATTCTGTGACAAAGCTGCACTGTGACGTGTCTGATGCGGTCAATGTATTGACACACACAACCAAGGTGAAAGTATCTCCCTCCCAGAGAGAGGAAATAAAAAAATTGAAGAAGAAATATGCTAAAGAAGACTCTCATGAGCTTTTTGGCGAAGCATTAGGTGATGTTGGCGGAAGACCTAAATCTAAAGCATCGAGTCATGATCAAAATGGTGAGAACGTGGTCAACAGAATTTCACCAAGTAACCAAATGGATAAATGCATTTTTTCTAGAGATGAAGACATGGGTGGGAAATTAGAAATTGAGAACAGTGAACAATGTGAAGTCAACATGGCCTGCTCTCGCACATACAGAAATGTCACTGAAAGCAGTTCATCTGTGGAAGATGGTGTTAGTATAACATCTGCTGAAGTTTCAGACGATTCTAGAATTTTCAACCAGGAACATGTTCAGTCTACAAGTAGCTCAGCTTCAAGTAATATGAACAATAAGAAAGACGGAATGAGGATTGGTTTTGTAGATGAAAATCTGTCTGGTAATCCCAAGTTAAGAGAGACAAAACGAGGCCCGCAAAAAGATTCATTGGAAACTGAAAGTGAAGCCGAGTTAGCCCTTGGTGGTGCTGTTTGGGACATCTTCCGCCGGCAAGACGTTCCAAAGCTAATTGAGTACCTTAGAAAGCACCAGAATGAATTCCGTCATCTCTACAATCTTCCTGTAGATTCTGTTATACACCCCATTCATGACCAGACTCTGTTCTTAAATGAGAGGCATAAGAAACAGCTGAAAAGGGAGTTTAATGTTGAACCATGGACTTTTGAGCAACACCTTGGCGAGGCTGTTTTCATTCCAGCGGGATGTCCTCATCAAGTGAGAAACAGACAATCTTGTATTAAGGTTGCACTTGATTTTGTATCTCCGGAAAATGTTAGAGAATGCTTACATCTAACTGAAGAGTTTCGTTTGCTCCCAAAAAACCACAGAGCCAAGGAGGACAAATTGGAGGTAAAAAAACTGACCCTCTATGCTGTAAGTGCTGCTGTTAGAGAAGTCAAAGAACTTATGACTGCCAAAGAGTAA 2982 0.4262 MDSSSDQRCKRSAGPKWRCSATASPGKSYCEKHLLQQRKNQIEKHKIREKKGEEESNNDKEKKRKRRTVKNIAGDDRSSGSELEALELEFGAEKGASRRSKKTKKLIDKTEENEESASGKGLMNLYQVKRGSKPKNGAQDAKKEGGSLMCHQCQRNDKSGVVNCSSCNRRRYCYECIKNWYPGKTREEFETVCPCCWGNCNCKACLREVPVLPRPEVNDSVKLQRLLYLLCKALPVLRHIHREQNLELEIETKIKELGNQLQEIDITRTKLHERERMYCDNCNTSIIGLYRSCPNPSCSYDLCLMCCQELRKGCQPGGIEAETSNEQFAGRARHDSTRNQSKNDHGKKYGWESQLEPTNFDFQDNPSSPFPEWEANCDGNIPCPPKQRGGCGTKFLELRRIFKANWVEKLLNNAEDLTRDYTPPSVDITEECSLCQPKLVEGKINLQIRRAAYRNGSNDNFLYCPNALDISDDEIEHFQRHWMRGEPVVVRNILDKTSGLSWEPMVMWRALRETGSNVKFKEETRSVTVIDCLDWCRLEINIHQFFKDYLEGRKHKNHWPAILKLKDWPSSTSFEERLPRHGAEFLSALPYRDYTDPKSGLLNFATKLPESSLKPDMGPKTYIAYGFSEELGRGDSVTKLHCDVSDAVNVLTHTTKVKVSPSQREEIKKLKKKYAKEDSHELFGEALGDVGGRPKSKASSHDQNGENVVNRISPSNQMDKCIFSRDEDMGGKLEIENSEQCEVNMACSRTYRNVTESSSSVEDGVSITSAEVSDDSRIFNQEHVQSTSSSASSNMNNKKDGMRIGFVDENLSGNPKLRETKRGPQKDSLETESEAELALGGAVWDIFRRQDVPKLIEYLRKHQNEFRHLYNLPVDSVIHPIHDQTLFLNERHKKQLKREFNVEPWTFEQHLGEAVFIPAGCPHQVRNRQSCIKVALDFVSPENVRECLHLTEEFRLLPKNHRAKEDKLEVKKLTLYAVSAAVREVKELMTAKE* 994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0373 993 ProSiteProfiles WRC domain profile. 3 48 IPR014977 -
Lan2g0373 993 SMART cupin_9 578 955 IPR003347 -
Lan2g0373 993 Pfam JmjC domain, hydroxylase 839 938 IPR003347 -
Lan2g0373 993 MobiDBLite consensus disorder prediction 808 832 - -
Lan2g0373 993 MobiDBLite consensus disorder prediction 325 350 - -
Lan2g0373 993 MobiDBLite consensus disorder prediction 814 832 - -
Lan2g0373 993 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 11 992 IPR045109 GO:0032454|GO:0033169
Lan2g0373 993 Gene3D Cupin 461 721 - -
Lan2g0373 993 Gene3D Cupin 770 964 - -
Lan2g0373 993 ProSiteProfiles JmjC domain profile. 597 955 IPR003347 -
Lan2g0373 993 ProSiteProfiles Zinc finger RING-type profile. 150 196 IPR001841 -
Lan2g0373 993 MobiDBLite consensus disorder prediction 1 141 - -
Lan2g0373 993 MobiDBLite consensus disorder prediction 32 73 - -
Lan2g0373 993 Pfam WRC 7 44 IPR014977 -
Lan2g0373 993 MobiDBLite consensus disorder prediction 685 713 - -
Lan2g0373 993 Coils Coil 35 55 - -
Lan2g0373 993 MobiDBLite consensus disorder prediction 80 97 - -
Lan2g0373 993 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJC) DOMAIN-CONTAINING PROTEIN 11 992 - -
Lan2g0373 993 SUPERFAMILY Clavaminate synthase-like 475 971 - -
Lan2g0373 993 MobiDBLite consensus disorder prediction 327 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0373 Lan-Chr2 3649255 3664698 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lan2g0373 JmjC 5.2e-16 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0373 K15601 - vvi:100258626 1088.56