Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0372 ATGGAATCAAGTAGCATTGATAGCAATATATTGTCTTTGAGTATGTTGGAAGAAGATGAGCATAGCCATCATCAATTTTCTTCAATCTCAAAGTTACATAGCAATGTTCCAACCACTACAAGTGTTCATGATCTTCTTGAGTGTCCTGTTTGTACCAATTCAATGTACCCTCCAATCCATCAGTGCCACAATGGACATACCCTTTGTTCGACATGTAAGACAAGGGTACACAACAGGTGCCCAACTTGTAGACAAGAACTTGGTGATATAAGGTGCCTGGCATTGGAGAAGATAGCAGAATCACTTGAACTTCCTTGCCGATACATCTCTCTTGGGTGCCCGGAGATATTTCCCTATTACAGCAAACTCAAACATGAGGCTATTTGTAACTTCAGACCCTATAACTGTCCTTATGCTGGTTCAGACTGTTCTGCCGTTGGAGATATTCCATACCTTGTTGCTCATTTAAGGGATGACCATCGGGTTGATATGCATTCTGGATGCACTTTCAATCATCGCTATGTCAAGAATAATCCCATGGAAGTAGAAAATGCTACATGGATGCTCACGGTCTTCCACTGTTTTGGTCAGTATTTTTGTCTCCATTTTGAAGCCTTCCAACTTGGTATGGCACCTGTTTACATGGCTTTCCTCCGTTTCATGGGCGACGAAAGAGAGGCACGGAACTACAGCTACAGCCTGGAGGTAGGAGGAAATGGACGGAAACTGACGTTCGAAGGAAGTCCACGAAGCATTCGAGATAGCCATAAAAAAGTCAGGGACAGTCATGACGGCCTCATCATATACCGGAACATGGCGCTTTTTTTCTCGGGTGTGGATAGGAAAGAGTTGAAGCTAAGAGTAACAGGAAGGATATGGAAAGAACAGCAAAACCCTGATGGTGGAGTATGCATACCAAACATGTGTGCTTAG 933 0.4341 MESSSIDSNILSLSMLEEDEHSHHQFSSISKLHSNVPTTTSVHDLLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKIAESLELPCRYISLGCPEIFPYYSKLKHEAICNFRPYNCPYAGSDCSAVGDIPYLVAHLRDDHRVDMHSGCTFNHRYVKNNPMEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDEREARNYSYSLEVGGNGRKLTFEGSPRSIRDSHKKVRDSHDGLIIYRNMALFFSGVDRKELKLRVTGRIWKEQQNPDGGVCIPNMCA* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0372 310 CDD RING-HC_SIAHs 46 84 - -
Lan2g0372 310 ProSiteProfiles Zinc finger SIAH-type profile. 101 161 IPR013010 GO:0008270
Lan2g0372 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 156 IPR013083 -
Lan2g0372 310 Pfam Seven in absentia protein family 90 289 IPR018121 GO:0005737|GO:0006511|GO:0007275
Lan2g0372 310 ProSiteProfiles Zinc finger RING-type profile. 48 84 IPR001841 -
Lan2g0372 310 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 164 289 IPR008974 GO:0005515
Lan2g0372 310 PANTHER UBIQUITIN LIGASE SINAT3 1 302 - -
Lan2g0372 310 SUPERFAMILY TRAF domain-like 101 293 - -
Lan2g0372 310 SUPERFAMILY RING/U-box 39 87 - -
Lan2g0372 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 100 IPR013083 -
Lan2g0372 310 CDD Sina 162 290 - -
Lan2g0372 310 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0372 Lan-Chr2 3639389 3642364 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0372 3 296 C3H Transcription Factor Family AT2G41980 71.088 2.20e-159 445
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0372 K04506 - gmx:100782764 624.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g0372 2 3639389 3642364 Lan16g1243 16 20455429 20458638 LSH