Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0368 ATGGAATCTACCGATATGAAGATCTACAATCTCTTCGTGAAACAATTAAATGGCAAAACCCTAACCCTAAAATTCCAATCCCCCAAAATCTCCCCTAATTCCATAAAGCACCGCCTTTTCCACCTCACCGGAATCCCCCCACACCACCAGCGCCTCCTCACCGGAACCCGCCACTTCTCCGACGCCGAAACCACCACCACCACCCTCTCATGCTCACACAACAGCAACACCTTCCCCACCGTCCACCTCCTCCTCCGCCTCAACGGCGGGAAGGGAGGGTTTGGATCACTCCTCCGTGGTGCAGCGACGAAGGCAGGGCAGAAAAAGACGAACAATTTCGACGCGTGCCGCGACATGAGTGGGAGGAGGCTGAGGCACGTGAACGCGGAGAAGAGGTTGCAGGAGTGGAGGGAGACGGAGGAGGAGAGAAAATTGGAGAAGGTGGCGGAGGAGTTTTTGAAGAAACAGATGAAGAAAGGGAAGAAGGGGAAAGGTGATGGAGAGGCACATAAGTATGTGGCTAAGTATAGGGAAGAGAGTGACAAATGTGTTGCTGATGTGGCGCTTTCGGTGAAAGAAGCGTTGATGAATGGTAATAAGGGTAAGAGGAAGGGTGAAGAATGTGTGAAAGGTGATGCTAAGAAGTTGAAGATATGGATGGGGAAGAGAAAAATGAATGAAAGTGACAGTGATTATTCCAGTGGAGAAGAGAATGATGATGAGGGGAAAAAGGAGAAATCCATTGTATTAAATAGCCAGAATGAGTCGGACTCAAACAAGGATGAAGGAAGTTCAGGTTCAGTGACTGGTAATAAACAGGGTGTAGACTCTTCAGGTGCAGGCTCATGTGAAAGTGGATCTGAAGAAGAGAAAGAAACTGTTGTAGAAGTCAAAGTGGAATCTATTGGACCACAAAGTAGTGATACTGATCAGGTGAAACTGGGTAATGCTGTTGAGCCTGTGTTATGTGATGAGGCGGTGAACCCTGCAACTATGGTTTATTCAGAGTCGGTAGTTTCTGGATTTAGTGCTGAAGATAATGAACATCATGATGTCAATGGGGTTGCCTCTGAAAAGCTTGATGGATCAGTAAGTCTAGCTTCAAATATTACAAACTCAGAAATTGTGAATGGTGCAAGCAAATGTATGGAAGTTGATCTTGAGAATAAAACATCTGTAAATGAAGAAACCCCACCAAGCATTCCAACATTAGAGGAGCCTCTGAATTTTGATGCTTTTAGTTCAGCTGCAGAACTTGAGGTTCTTGGTATGGAAAGGTTGAAGTCTGAACTGCAATCACGCGGGTTAAAATGTGGAGGTGCTTTGCAGGAGCGTGCTGCTAGGCTTTTTCTTTTAAAATCTACCCCACTGGATAAGCTTCCAAAGAAGCTGCTTGCAAAAAAATGA 1407 0.4591 MESTDMKIYNLFVKQLNGKTLTLKFQSPKISPNSIKHRLFHLTGIPPHHQRLLTGTRHFSDAETTTTTLSCSHNSNTFPTVHLLLRLNGGKGGFGSLLRGAATKAGQKKTNNFDACRDMSGRRLRHVNAEKRLQEWRETEEERKLEKVAEEFLKKQMKKGKKGKGDGEAHKYVAKYREESDKCVADVALSVKEALMNGNKGKRKGEECVKGDAKKLKIWMGKRKMNESDSDYSSGEENDDEGKKEKSIVLNSQNESDSNKDEGSSGSVTGNKQGVDSSGAGSCESGSEEEKETVVEVKVESIGPQSSDTDQVKLGNAVEPVLCDEAVNPATMVYSESVVSGFSAEDNEHHDVNGVASEKLDGSVSLASNITNSEIVNGASKCMEVDLENKTSVNEETPPSIPTLEEPLNFDAFSSAAELEVLGMERLKSELQSRGLKCGGALQERAARLFLLKSTPLDKLPKKLLAKK* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0368 468 SMART ubq_7 9 86 IPR000626 GO:0005515
Lan2g0368 468 MobiDBLite consensus disorder prediction 220 250 - -
Lan2g0368 468 MobiDBLite consensus disorder prediction 251 284 - -
Lan2g0368 468 Pfam Silencing defective 2 N-terminal ubiquitin domain 9 156 IPR024974 -
Lan2g0368 468 SUPERFAMILY Ubiquitin-like 8 91 IPR029071 -
Lan2g0368 468 Pfam Replication stress response SDE2 C-terminal 401 467 - -
Lan2g0368 468 PANTHER REPLICATION STRESS RESPONSE REGULATOR SDE2 10 467 - -
Lan2g0368 468 Gene3D - 4 90 - -
Lan2g0368 468 MobiDBLite consensus disorder prediction 220 312 - -
Lan2g0368 468 PANTHER SPLICING FACTOR SF3A-RELATED 10 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0368 Lan-Chr2 3609519 3612522 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0368 401 467 C2H2 Transcription Factor Family AT5G06160 47.761 9.69e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0368 K25059 - gmx:100799364 432.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g0368 2 3609519 3612522 Lan16g1248 16 20494827 20497570 LSH