Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lan2g0365 | ATGGCGGATTCTGATGAAGTTGCAAAATCTACTGAAAACCAGCAAACAGAGCAAGTGTGTAGTTTCTTCAGAAAACCTGTTAATAAAAAGAATATAAGGAAACGGACTGTTGATAATGAAGATGATGAGGATTCGAGGAACGAAAGCTCTTTGTTACATATTCAGAAAAAGACCTTGAAGCCTGACAATAAGTTGTATTTTTCCTCCAGCACCTCAAAAAGCTCTGCATCTGCTGAACCAAGCGAAGAATCTGAAAAACCAGTTTTTCACTTTGAGTCTACCAGAGAGATTCAAGTTCAACATGATAACAAAGCGACAGCAACTTTAGAGACTGAGACTGATTTTTCGAGAGATGCTCGTGCCATCCGTGAAAGAGCACTTAAGCAAGCTGAAGAGAGTCTGAAGGGGAAAGGCACTAGGTCTGAGGGCGGTGATAAATTGTATAAGGGACTCAACAGTTACAAAGATTACAAGGCTGGCTTTCGTAGAGAGCAAACAATTGCTAGTGAAAAGGCTGGTGGGTCACATGGTCCTCTCAGGGCTTCAGCTCATATTAGAGTTTCGGCAAGATTTGATTATCAACCTGACATATGTAAGGATTACAAGGAGACTGGTTACTGTGGGTATGGTGATTCATGTAAGTTTATGCATGATCGAGGGGATTACAAGTCTGGGTGGCAGATGGAGAAGGAATGGGAAGAAGCTGAGAAAGCAAGAAAGATGAGATTGGCTGCGGGTGAGGATGCGGAAGAGGAGGGAGCTAGTTTGACTGATGAAGATGATGAGGATGCATTACCATTTGCATGTTTCATTTGTAGAAATCCTTTTCTGGATCCTGTTGTAACCAAGTGCAAGCACTACTTCTGCGAGCATTGTGCATTGAAGCATCATGCAAAGAATAAGAAGTGTTTTGTCTGCAACCAGCCGACTCTTGGCATTTTTAACGTTGCTCAGGAGATACGGCGGAAGATGGCAGAGGATAAATGA | 987 | 0.4245 | MADSDEVAKSTENQQTEQVCSFFRKPVNKKNIRKRTVDNEDDEDSRNESSLLHIQKKTLKPDNKLYFSSSTSKSSASAEPSEESEKPVFHFESTREIQVQHDNKATATLETETDFSRDARAIRERALKQAEESLKGKGTRSEGGDKLYKGLNSYKDYKAGFRREQTIASEKAGGSHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQMEKEWEEAEKARKMRLAAGEDAEEEGASLTDEDDEDALPFACFICRNPFLDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNVAQEIRRKMAEDK* | 329 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lan2g0365 | 328 | SMART | ring_2 | 269 | 306 | IPR001841 | - | |
| Lan2g0365 | 328 | MobiDBLite | consensus disorder prediction | 1 | 89 | - | - | |
| Lan2g0365 | 328 | MobiDBLite | consensus disorder prediction | 32 | 60 | - | - | |
| Lan2g0365 | 328 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 193 | 218 | IPR000571 | GO:0046872 | |
| Lan2g0365 | 328 | SUPERFAMILY | CCCH zinc finger | 191 | 223 | IPR036855 | GO:0046872 | |
| Lan2g0365 | 328 | PANTHER | ZINC FINGER PROTEIN 183 | 9 | 327 | IPR039971 | - | |
| Lan2g0365 | 328 | ProSitePatterns | Zinc finger RING-type signature. | 284 | 293 | IPR017907 | - | |
| Lan2g0365 | 328 | SMART | c3hfinal6 | 192 | 219 | IPR000571 | GO:0046872 | |
| Lan2g0365 | 328 | CDD | RING-HC_RNF113A_B | 267 | 307 | - | - | |
| Lan2g0365 | 328 | MobiDBLite | consensus disorder prediction | 61 | 78 | - | - | |
| Lan2g0365 | 328 | ProSiteProfiles | Zinc finger RING-type profile. | 269 | 307 | IPR001841 | - | |
| Lan2g0365 | 328 | ProSiteProfiles | Zinc finger C3H1-type profile. | 192 | 220 | IPR000571 | GO:0046872 | |
| Lan2g0365 | 328 | Gene3D | - | 190 | 224 | - | - | |
| Lan2g0365 | 328 | MobiDBLite | consensus disorder prediction | 7 | 22 | - | - | |
| Lan2g0365 | 328 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 1-LIKE | 9 | 327 | - | - | |
| Lan2g0365 | 328 | Pfam | Zinc finger, C3HC4 type (RING finger) | 268 | 310 | - | - | |
| Lan2g0365 | 328 | SUPERFAMILY | RING/U-box | 268 | 311 | - | - | |
| Lan2g0365 | 328 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 267 | 326 | IPR013083 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lan2g0365 | 10 | 328 | C2H2 Transcription Factor Family | AT1G01350 | 69.375 | 4.19e-165 | 462 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C3H | Lan2g0365 | zf-C3HC4_3 | 2.6e-08 | CL0229 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lan2g0365 | K13127 | - | gmx:100787434 | 577.4 |