Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0365 ATGGCGGATTCTGATGAAGTTGCAAAATCTACTGAAAACCAGCAAACAGAGCAAGTGTGTAGTTTCTTCAGAAAACCTGTTAATAAAAAGAATATAAGGAAACGGACTGTTGATAATGAAGATGATGAGGATTCGAGGAACGAAAGCTCTTTGTTACATATTCAGAAAAAGACCTTGAAGCCTGACAATAAGTTGTATTTTTCCTCCAGCACCTCAAAAAGCTCTGCATCTGCTGAACCAAGCGAAGAATCTGAAAAACCAGTTTTTCACTTTGAGTCTACCAGAGAGATTCAAGTTCAACATGATAACAAAGCGACAGCAACTTTAGAGACTGAGACTGATTTTTCGAGAGATGCTCGTGCCATCCGTGAAAGAGCACTTAAGCAAGCTGAAGAGAGTCTGAAGGGGAAAGGCACTAGGTCTGAGGGCGGTGATAAATTGTATAAGGGACTCAACAGTTACAAAGATTACAAGGCTGGCTTTCGTAGAGAGCAAACAATTGCTAGTGAAAAGGCTGGTGGGTCACATGGTCCTCTCAGGGCTTCAGCTCATATTAGAGTTTCGGCAAGATTTGATTATCAACCTGACATATGTAAGGATTACAAGGAGACTGGTTACTGTGGGTATGGTGATTCATGTAAGTTTATGCATGATCGAGGGGATTACAAGTCTGGGTGGCAGATGGAGAAGGAATGGGAAGAAGCTGAGAAAGCAAGAAAGATGAGATTGGCTGCGGGTGAGGATGCGGAAGAGGAGGGAGCTAGTTTGACTGATGAAGATGATGAGGATGCATTACCATTTGCATGTTTCATTTGTAGAAATCCTTTTCTGGATCCTGTTGTAACCAAGTGCAAGCACTACTTCTGCGAGCATTGTGCATTGAAGCATCATGCAAAGAATAAGAAGTGTTTTGTCTGCAACCAGCCGACTCTTGGCATTTTTAACGTTGCTCAGGAGATACGGCGGAAGATGGCAGAGGATAAATGA 987 0.4245 MADSDEVAKSTENQQTEQVCSFFRKPVNKKNIRKRTVDNEDDEDSRNESSLLHIQKKTLKPDNKLYFSSSTSKSSASAEPSEESEKPVFHFESTREIQVQHDNKATATLETETDFSRDARAIRERALKQAEESLKGKGTRSEGGDKLYKGLNSYKDYKAGFRREQTIASEKAGGSHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQMEKEWEEAEKARKMRLAAGEDAEEEGASLTDEDDEDALPFACFICRNPFLDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNVAQEIRRKMAEDK* 329
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0365 328 SMART ring_2 269 306 IPR001841 -
Lan2g0365 328 MobiDBLite consensus disorder prediction 1 89 - -
Lan2g0365 328 MobiDBLite consensus disorder prediction 32 60 - -
Lan2g0365 328 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 193 218 IPR000571 GO:0046872
Lan2g0365 328 SUPERFAMILY CCCH zinc finger 191 223 IPR036855 GO:0046872
Lan2g0365 328 PANTHER ZINC FINGER PROTEIN 183 9 327 IPR039971 -
Lan2g0365 328 ProSitePatterns Zinc finger RING-type signature. 284 293 IPR017907 -
Lan2g0365 328 SMART c3hfinal6 192 219 IPR000571 GO:0046872
Lan2g0365 328 CDD RING-HC_RNF113A_B 267 307 - -
Lan2g0365 328 MobiDBLite consensus disorder prediction 61 78 - -
Lan2g0365 328 ProSiteProfiles Zinc finger RING-type profile. 269 307 IPR001841 -
Lan2g0365 328 ProSiteProfiles Zinc finger C3H1-type profile. 192 220 IPR000571 GO:0046872
Lan2g0365 328 Gene3D - 190 224 - -
Lan2g0365 328 MobiDBLite consensus disorder prediction 7 22 - -
Lan2g0365 328 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 1-LIKE 9 327 - -
Lan2g0365 328 Pfam Zinc finger, C3HC4 type (RING finger) 268 310 - -
Lan2g0365 328 SUPERFAMILY RING/U-box 268 311 - -
Lan2g0365 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 326 IPR013083 -
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0365 10 328 C2H2 Transcription Factor Family AT1G01350 69.375 4.19e-165 462
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan2g0365 zf-C3HC4_3 2.6e-08 CL0229
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0365 K13127 - gmx:100787434 577.4