Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0339 ATGCCCATGATGAACAACAACATTGGACACTTTGATGACACAACATTAACCAAAGTGTTTGTGGGTGGACTAGCTTGGGAGACTAAGAAAGAAGCATTGAGAGAATACTTTGAGAAGTTTGGTGAGATCCTTGAAGCTATCATCATATATGATAAGATCACTGGAAAATCCAAAGGCTATGGTTTTGTGACATTTAAGAAAAAAGAGGCGGCGAAGAAAGCATGTGATGAGTCAATTATGATTATCAATGGATGCAAAGCAAATTGCAATCTGGCTTCTCTCGGAGCACGCCGGCCAACAAGGTCATCTTCATCCACCATTTTTTCAACTCCTACTACTATTCCTCCTCCACAATCACAAGGAGGATCAAAGGGTGGAGCATTAAGGAATTGCAATGAAGTCCAGTGTTATTTTCCTATAGGAACACCTGCACCTGCTTCCCCATTCCATCATCAACCTGTTCCTTTTTATGGTTTCAGGTACAGGCCCACCTACATCACACCAGAAATGAATTACACTCACAATTATAATTATAATCAGAAGCTGAGCTACAACAATGGACAATTATCCCATATTATATACCCAAGATATGCTACTGTGTGCACCAATACATGGTTTCAAATGTACCCTCTCTATGACAACCATCGATCTGAGTCAATGATTCTACCTACTCAAATCTACCATCCAACAATACCCTCTTATTTTCCCATATTGCCCCCAACTATCAATCCCAATACAGGTTCAGTTGGCAGAGGTGAACGCTTTAAAAGGTGGGTATGA 780 0.4051 MPMMNNNIGHFDDTTLTKVFVGGLAWETKKEALREYFEKFGEILEAIIIYDKITGKSKGYGFVTFKKKEAAKKACDESIMIINGCKANCNLASLGARRPTRSSSSTIFSTPTTIPPPQSQGGSKGGALRNCNEVQCYFPIGTPAPASPFHHQPVPFYGFRYRPTYITPEMNYTHNYNYNQKLSYNNGQLSHIIYPRYATVCTNTWFQMYPLYDNHRSESMILPTQIYHPTIPSYFPILPPTINPNTGSVGRGERFKRWV* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0339 259 Gene3D - 5 106 IPR012677 -
Lan2g0339 259 SUPERFAMILY RNA-binding domain, RBD 16 104 IPR035979 GO:0003676
Lan2g0339 259 PANTHER GEO13361P1-RELATED 3 241 - -
Lan2g0339 259 CDD RRM_RBM24_RBM38_like 17 92 - -
Lan2g0339 259 SMART rrm1_1 18 90 IPR000504 GO:0003723
Lan2g0339 259 PANTHER RNA-BINDING PROTEIN ARP1-RELATED 3 241 - -
Lan2g0339 259 MobiDBLite consensus disorder prediction 100 125 - -
Lan2g0339 259 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 76 IPR000504 GO:0003723
Lan2g0339 259 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 84 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0339 Lan-Chr2 3171299 3174379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0339 13 162 C2H2 Transcription Factor Family AT2G19380 28.221 4.19e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0339 - - qsu:112041112 247.284