Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0327 ATGTGTGGTGGTGCTATTATCTCCGACTTCATCTCCGACGGCGGAGCTCCGGCGAGGTCCCGTATTCTCACCGCTGATTACCTCTGGCCGGATTTGAAGAAAAATGGTTCAGAGAAGAATAAGAGGAAGAAGAAGGTGCTAATCAATTTGGACGATGATTTCGAAGCTGATTTTAGGGATTTCAACGAAGATTCTGAAGTCGATGATGATGACGATGTTTTCATGATGGATTCGAAAAAGAAGCCCTCTGCTTTCAGATCCACCAAACCTTCCAATTCAATCTCTCATGGATCTACCGCTGAAAAACCTGTGGTGTTTGAAGCACAAGAGCAAGCTGACAAGTGTGTGAAGAGGAAGAGAAAGAATCAGTATAGGGGAATTCGTCAGCGTCCTTGGGGAAAATGGGCAGCTGAGATCAGAGATCCGAGAAAGGGGGTTCGTGTCTGGCTCGGAACCTTCCGCACTGCTGAAGAAGCTGCAAGAGCATATGATGCTGAAGCGCGTAGGATCCGTGGAAGGAAAGCCAAGGTCAATTTCCCTGATGAAGCTCTAGATGCTTCCCCCAAACGTTCCAAGGCGAGTCCACAGGAAAAACTTACAAAGGAAAAGATGAACACTGTTCAGCCTAATGGCAATCTGAGCCAGAAGTTCAATGTTGTTGGTAGCAATCAGGACAACATCTATACTTCTATGGATCTGGTGGAACAGAAGCCACTGGTCAACCACTATGCTAACATGGGTTCATTCCTTAGAAGAGGACATGAGATCAATTCTCTTGCTTCATCTGATGATTTGACGCGTTATTTCAGTTCAGATCAGGGGAGTAATTCATTTGATTATTCAGATCTTCCTGAGATCTCATCTATGCTTTCTGCTCCTCTGGAAGGTGAATCTCATTTCGTGCAAAATGCCAATCAGCAGCAGAACACCCTGCATTCTAACTCTCGGGATGCTTCTGCAAGGTCATTGTCTGATGAGCTTGCGGAAATTGAATCCGAGTTGAACTTCTTCAAGATGCCATATCTTGAAGGGAGCTGGGATGATGCTTCATTGGAATCCCTGCTTGCTGGAGACACAACTCAGTATAGTGGAAACCTGATGAACCTTTGGAGCATTGATGACATTACAATGGGTGGTGGTGGAGTTCTCTGA 1152 0.4557 MCGGAIISDFISDGGAPARSRILTADYLWPDLKKNGSEKNKRKKKVLINLDDDFEADFRDFNEDSEVDDDDDVFMMDSKKKPSAFRSTKPSNSISHGSTAEKPVVFEAQEQADKCVKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFRTAEEAARAYDAEARRIRGRKAKVNFPDEALDASPKRSKASPQEKLTKEKMNTVQPNGNLSQKFNVVGSNQDNIYTSMDLVEQKPLVNHYANMGSFLRRGHEINSLASSDDLTRYFSSDQGSNSFDYSDLPEISSMLSAPLEGESHFVQNANQQQNTLHSNSRDASARSLSDELAEIESELNFFKMPYLEGSWDDASLESLLAGDTTQYSGNLMNLWSIDDITMGGGGVL* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0327 383 MobiDBLite consensus disorder prediction 183 214 - -
Lan2g0327 383 SUPERFAMILY DNA-binding domain 123 182 IPR016177 GO:0003677
Lan2g0327 383 PANTHER EREBP TRANSCRIPTION FACTOR 1 352 - -
Lan2g0327 383 MobiDBLite consensus disorder prediction 183 199 - -
Lan2g0327 383 ProSiteProfiles AP2/ERF domain profile. 123 180 IPR001471 GO:0003700|GO:0006355
Lan2g0327 383 MobiDBLite consensus disorder prediction 200 214 - -
Lan2g0327 383 SMART rav1_2 123 186 IPR001471 GO:0003700|GO:0006355
Lan2g0327 383 CDD AP2 123 181 IPR001471 GO:0003700|GO:0006355
Lan2g0327 383 PRINTS Ethylene responsive element binding protein signature 124 135 IPR001471 GO:0003700|GO:0006355
Lan2g0327 383 PRINTS Ethylene responsive element binding protein signature 146 162 IPR001471 GO:0003700|GO:0006355
Lan2g0327 383 Pfam AP2 domain 123 172 IPR001471 GO:0003700|GO:0006355
Lan2g0327 383 PANTHER DNA-BINDING DOMAIN 1 352 IPR044808 GO:0003700|GO:0009873
Lan2g0327 383 Gene3D AP2/ERF domain 122 181 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0327 Lan-Chr2 2901269 2903522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0327 1 377 AP2-EREBP Transcription Factor Family AT3G14230 45.946 1.71e-61 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan2g0327 AP2 2.5e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0327 K09286 - gmx:100170723 392.889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0580 11 4617673 4620480 Lan2g0327 2 2901269 2903522 LSH
Lan4g0830 4 10286988 10289451 Lan2g0327 2 2901269 2903522 PCT
Lan2g0327 2 2901269 2903522 Lan4g0830 4 10286988 10289451 PCT