Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0324 ATGGCCGCCGCCGCCACCAATGCTCCGCCGCGCCACCTTTCTCAGAAGGAGGCTGATATCCAATTGATGTTAGCTGCAGATGTTCACTTAGGCACTAAAAACTGTGATTTCCAAATGGAACGTTACATCTTCAAACGCCGAAGCGATGGTATTCATGTGATTAATCTTGGAAAGACATGGGAGAAGCTTCATATGGCAGCTAGGGTTATTGTTGGAATTGAGAATCCGAATGATATTATTGTTCAATCAGCTAGACCTTATGGTCAAAGAGCTGTTCTTAAATTTGCTCAATATACTGGTGCTCATGCTATTGCTGGTAGACATACACCTGGTACTTTCACTAATCAGCTTCAGACTTCTTTCACTGAGCCTCGTCTTCTTATTTTAACTGATCCCAGAACTGATCATCAGCCTATTAAGGAAGCTGCTCTTGGAAATATTCCCACCATTGCTTTCTGTGACACTGATTCACCTATGCGCTATGTTGACATTGGTATTCCTGCCAATAACAAGGGCAAACACAGTATTGGTTGTCTCTTTTGGCTTCTCGCAAGGATGGTGTTGCAAATGCGTGGTACTATTCGTCCAGGCCTTAAATGGGATGTCATGGTGGATTTGTTCTTCTATAGAGAACCTGAGGAGGCAAAGCAGCAAGATGAGGATGAAGTGATACCAGGTGCAGATTATGCTATTCAAGACTTCAATGCACCTACTATTGGCGGCATTGCTGCTGATGGCCAGTGGCCTACTGCAGTCGATTCATCATGGACTGACGCTGTTCCACAACCTATTGCTGCAGTTCCTGGTGCCGTTACTTGGGCTGCTGCTGCCCCAGAAGCTGGAGAATGGGGAGATTCTGTTGCACCACCACAACAAATCCCTGCACCTGCAGTCGAAAATGTCCAACCTTCTGGCTGGGAATGA 924 0.4589 MAAAATNAPPRHLSQKEADIQLMLAADVHLGTKNCDFQMERYIFKRRSDGIHVINLGKTWEKLHMAARVIVGIENPNDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFTEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQQDEDEVIPGADYAIQDFNAPTIGGIAADGQWPTAVDSSWTDAVPQPIAAVPGAVTWAAAAPEAGEWGDSVAPPQQIPAPAVENVQPSGWE* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0324 307 TIGRFAM uS2_euk_arch: ribosomal protein uS2 16 211 IPR005707 GO:0003735|GO:0006412|GO:0015935
Lan2g0324 307 MobiDBLite consensus disorder prediction 281 307 - -
Lan2g0324 307 SUPERFAMILY Ribosomal protein S2 15 205 IPR023591 -
Lan2g0324 307 PRINTS Ribosomal protein S2 signature 20 38 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lan2g0324 307 PRINTS Ribosomal protein S2 signature 50 59 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lan2g0324 307 PRINTS Ribosomal protein S2 signature 99 116 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lan2g0324 307 PRINTS Ribosomal protein S2 signature 124 141 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lan2g0324 307 PRINTS Ribosomal protein S2 signature 141 152 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lan2g0324 307 PRINTS Ribosomal protein S2 signature 162 176 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lan2g0324 307 Pfam Ribosomal protein S2 23 116 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lan2g0324 307 Pfam Ribosomal protein S2 122 187 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lan2g0324 307 PANTHER 40S RIBOSOMAL PROTEIN SA 5 278 IPR005707 GO:0003735|GO:0006412|GO:0015935
Lan2g0324 307 CDD RPS2 23 189 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lan2g0324 307 Hamap 40S ribosomal protein SA [rps-0]. 7 276 IPR027498 GO:0003735|GO:0006412|GO:0015935
Lan2g0324 307 ProSitePatterns Ribosomal protein S2 signature 2. 124 148 IPR018130 GO:0003735|GO:0005840|GO:0006412
Lan2g0324 307 Gene3D - 19 223 - -
Lan2g0324 307 PANTHER 40S RIBOSOMAL PROTEIN SA 5 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0324 Lan-Chr2 2868886 2871775 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0324 1 283 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 71.379 1.35e-150 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0324 K02998 - gmx:548014 507.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0575 11 4569231 4571595 Lan2g0324 2 2868886 2871775 LSH
Lan9g1044 9 17669368 17671753 Lan2g0324 2 2868886 2871775 LSH