Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0298 ATGGATCATCAAGGGCATGGCCAGAACCCAAATATGGGGGTTATCGGTAGCGGAGCTCAACTCTCTTACGGTTCTAATCCTTATCAGCAAAGCCAAATGACTGGAGCCCCAGGGTCAGTTGTTACATCTGCTGGGAACATGCAATCCATCGGTCAACCTGCTGGAGCTCAGCTGGGACAACATCAACTTGCTTATCAGCATATTCACCAGCAACAACAGCAGCAACTTCAGCAACAGCTCCAACAGTTTTGGGCAACTCAATACCAAGAGATTGAGAAAGTTACCGATTTCAAAAATCACAGCCTTCCCCTGGCAAGGATCAAGAAGATTATGAAAGCAGATGAGGATGTCCGAATGATATCAGCTGAGGCACCAGTCATATTTGCAAGGGCATGCGAAATGTTCATATTAGAGTTAACCCGTCTATGTATACTTTAA 438 0.4543 MDHQGHGQNPNMGVIGSGAQLSYGSNPYQQSQMTGAPGSVVTSAGNMQSIGQPAGAQLGQHQLAYQHIHQQQQQQLQQQLQQFWATQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTRLCIL* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0298 145 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 140 - -
Lan2g0298 145 SUPERFAMILY Histone-fold 49 143 IPR009072 GO:0046982
Lan2g0298 145 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 101 140 IPR003958 -
Lan2g0298 145 MobiDBLite consensus disorder prediction 1 21 - -
Lan2g0298 145 Gene3D Histone, subunit A 62 144 IPR009072 GO:0046982
Lan2g0298 145 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 1 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0298 Lan-Chr2 2529249 2531279 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0298 16 140 CCAAT-HAP5 Transcription Factor Family AT1G54830 64.000 9.04e-41 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Lan2g0298 CBFD_NFYB_HMF 2.3e-11 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0298 K08066 - gmx:100782754 215.312
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0867 4 10544194 10547236 Lan2g0298 2 2529249 2531279 LSH
Lan2g0298 2 2529249 2531279 Lan16g1070 16 17859176 17862041 LSH
Lan2g0298 2 2529249 2531279 Lan8g0307 8 5171351 5173713 PCT
Lan2g0298 2 2529249 2531279 Lan20g0661 20 5225634 5227978 PCT
Lan8g0307 8 5171351 5173713 Lan2g0298 2 2529249 2531279 PCT
Lan20g0661 20 5225634 5227978 Lan2g0298 2 2529249 2531279 PCT