Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0290 ATGCAAGACATTTTTGGATCAGTTCGTCGATCTTTCGTGTTCCGTTCTTCACCGGAGAACGAAGAACCGTCGCATTCTCTCAGAGGAACCCTAGTTGACAAGATCAGTTGCTGTATTCGTAATTCCAGAGTATTCTCCAAACCTTCTTCGACTACGATTCGATGGCGCAAGGGCGAGTTGATTGGTTGCGGTGCTTTTGGTCATGTTTATGTTGGAATGAATCTCGATTCTGGAGAGCTTCTAGCTGTTAAACAGGTTTTGATTGCAGCGAGTAGCGCTTCCAAAGAGAAGGCAAAGGCCCACATAAAAGAGCTTGAGGAAGAAGTTAAGCTTCTTAAAGATCTTTCACATCCCAATATTGTTAGATATTTGGGTACAGTTAGAGAAGAGGAAAGTTTAAATATTCTCCTGGAGTTTGTTCCTGGTGGATCCATATCATCACTATTGGGGAAGTTTGGAGCTTTCCCCGAGGCTGTCATAAGAACTTACACGAAGCAAATACTGGTTGGACTTGAGTACTTGCACAAAAATGGAATTATTCACAGAGACATTAAGGGAGCCAATATCCTTGTAGATAATAAAGGGTGCATAAAATTGGCAGATTTTGGGGCATCCAAGCAAGTCGTTGAGCTGGCTACCATTTCCGGTGCCAAATCTATGAAGGGTACTCCATATTGGATGGCCCCTGAAGTTATTCTCCAAACCGGGCATAGCTTCTCTGCTGACATATGGAGCGTCGGTTGTACTGTGATTGAGATGGTCACTGGAAAGCCTCCATGGAGCCAGCAATACCAACAAGAGGTTGCTGCTCTCTTCCATATAGGGACGACCAAGGCTCATCCGCCAATCCCTGATCATCTATCTGCTGGAGCAAAAGATTTCCTGATAAAATGTTTGGAGAAGGAACCAGATTTGAGACCATCAGCATCAGAGTTGCTGCAGCATCCCTTTGTTACTGGAGAATCTACGGATACTCTTCCTCTGTCATCCACTACCTTGGAAAATTTTGAAGCTTCATCATCATGTGCCCCAAATGTTGACTCCTTCCTTTGCTCCTCGACTGTAAATACTCAGGGTTCAGGAAATAAACAGTTGTGGAGAATGAGCAATGATGACGAAATGTGTGTGATTGATGACAAAGATGAGTTCTTGCAGTGTGATGTCAAACACAAATCATTGATATCGGAAAATATTGAGAGTTTCAACCCAATGTCTGATCCTTCTGATGATTGGGGGTGTAAATTTGACGCGAGTCCAGAACTGGAACATAGAGAAGTTGGTTTTGACATTGATGAAAGTTACATGCCATGTGGTCAATCAGGGGCAAATGAGGGGCAGAATGATTCTTCCTTTCCAAGTGTGCCATCTCTGACAGAGGAAGAAGAGGAGCTCACAGAGTCAAAAATTAAAGACTTTTTAGCTGAGAAGGCTCTTGAACTGAAAATACTCCAGACACCTTTATACGAAGAGTTCTACAACACTTTAAATACATCTTTCTCTACCAATGTGATTAATAGCCCAAGTGATGAACCTGGTGGTCGAAAATACTTGAAATTACCTCCGAAAAGCAGGTCACCAAGTCGGGCACCGAGTAACACTCCATCTAAAGCAGTTGACAATGCTAGAAGTCCTGGAAGTAATGACAGGTCCTCGTCAATTGTTGGCAGTGTAAATGATCATTGTTCACAGGATATTCCAGTATCTCCTCTTACTGAAAGGAACAGACTGTCCCAGCAAGATTCAAGTAGCCCAAGTTTAAGTGATTCTGAGAGACTGAGGAAGTGGGAAGAAGAGCTCTACCAAGAGCTTGAGAGAAAGAGAGAAATGAAACGCCAAACTGGTATGGGAGCTTTACATAGGCAAAGAGAGCGGTCGAGATTTGCTTCATCCAGCTAA 1896 0.432 MQDIFGSVRRSFVFRSSPENEEPSHSLRGTLVDKISCCIRNSRVFSKPSSTTIRWRKGELIGCGAFGHVYVGMNLDSGELLAVKQVLIAASSASKEKAKAHIKELEEEVKLLKDLSHPNIVRYLGTVREEESLNILLEFVPGGSISSLLGKFGAFPEAVIRTYTKQILVGLEYLHKNGIIHRDIKGANILVDNKGCIKLADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMVTGKPPWSQQYQQEVAALFHIGTTKAHPPIPDHLSAGAKDFLIKCLEKEPDLRPSASELLQHPFVTGESTDTLPLSSTTLENFEASSSCAPNVDSFLCSSTVNTQGSGNKQLWRMSNDDEMCVIDDKDEFLQCDVKHKSLISENIESFNPMSDPSDDWGCKFDASPELEHREVGFDIDESYMPCGQSGANEGQNDSSFPSVPSLTEEEEELTESKIKDFLAEKALELKILQTPLYEEFYNTLNTSFSTNVINSPSDEPGGRKYLKLPPKSRSPSRAPSNTPSKAVDNARSPGSNDRSSSIVGSVNDHCSQDIPVSPLTERNRLSQQDSSSPSLSDSERLRKWEEELYQELERKREMKRQTGMGALHRQRERSRFASSS* 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0290 631 ProSitePatterns Protein kinases ATP-binding region signature. 61 84 IPR017441 GO:0005524
Lan2g0290 631 MobiDBLite consensus disorder prediction 587 631 - -
Lan2g0290 631 Coils Coil 88 115 - -
Lan2g0290 631 MobiDBLite consensus disorder prediction 436 463 - -
Lan2g0290 631 MobiDBLite consensus disorder prediction 439 456 - -
Lan2g0290 631 SUPERFAMILY Protein kinase-like (PK-like) 49 358 IPR011009 -
Lan2g0290 631 Gene3D Transferase(Phosphotransferase) domain 1 53 348 - -
Lan2g0290 631 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Lan2g0290 631 Pfam Protein kinase domain 56 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan2g0290 631 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 595 - -
Lan2g0290 631 CDD STKc_MAPKKK 54 318 - -
Lan2g0290 631 SMART serkin_6 55 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan2g0290 631 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE NPK1 1 595 - -
Lan2g0290 631 ProSiteProfiles Protein kinase domain profile. 55 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan2g0290 631 MobiDBLite consensus disorder prediction 499 631 - -
Lan2g0290 631 Coils Coil 586 612 - -
Lan2g0290 631 MobiDBLite consensus disorder prediction 525 586 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0290 Lan-Chr2 2476315 2481325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0290 1 629 MAP Kinase Kinase Kinase AT1G54960 54.651 0.0 653
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lan2g0290 Pkinase 1.4e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0290 K20606 - gmx:100807537 908.672
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0510 4 7717100 7719140 Lan2g0290 2 2476315 2481325 LSH
Lan2g0290 2 2476315 2481325 Lan16g1064 16 17822165 17827093 LSH