Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0281 ATGAGTAGCCGCTCAAGTCGAATAATTTATGTTGGCAATCTTCCTGGTGATATTCGCTTGAGGGAAGTAGATGATCTTTTCCACAAGTTTGGTCCTATTGTTGATATTGATTTGAAGATTCCGCCAAGACCACCAGGTTATGCTTTTGTGGAGTTTGAGGATGCTCGTGATGCTGAAGATGCAATTTATTATCGAGATGGTTACAAATTTGATGGTCAACGGTTGAGAGTTGAACTTGCACATGGTGGACGAGGACATTCATCATCTGTAGAACGTTACAGTAGTTATAGTGGTAGCAGTGGTAGCCGAGGAATTTCTAGGCGTTCTGATTATCGTGTTCTGATCACTGGATTACCTCCTTCAGCTTCTTGGCAAGATCTTAAAGATCACATGCGTAAAGCTGGTGACGTATGTTTCTCTCAAGTCTTCCGTGAACGTGGTGGCATGACTGGGATAGTGGACTATACGAACTATGATGATATGAAATATGCTATTAGAAAACTTGATGACTCAGAATTCCGAAATGCCTTTTCTCGCTCATACGTACGGGTGAGGGAATATGATCGACGTAGTTATTCTAGGAGTCCTAGTCGTGATTCTAGGGGGAGCTATTCTAGAAGCCCTAGCCGCAGTCCGTATATGTCACGCAGTCGAAGCCGCAGTCATAGTCATAGCTATAGTGACAGGAGCAGAAGCTTCTCTCCAAAAGCAAAACGCTCCCTGCGGTCTGTATCTCTTTCAAGATCCTTATCAAGATCCAGATCTCCAAATTCATCTCCTCCCCCTCGCAAGAGCCGCAGTCCCAGCCGAAGCCCAAGAAGAAATGTGTCACAATCTCGTTCACCTTCGGTGAGATCTGAACGCAGGGGATCTGTTAACTCTGGAGAGAGCAATTGA 897 0.4482 MSSRSSRIIYVGNLPGDIRLREVDDLFHKFGPIVDIDLKIPPRPPGYAFVEFEDARDAEDAIYYRDGYKFDGQRLRVELAHGGRGHSSSVERYSSYSGSSGSRGISRRSDYRVLITGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYAIRKLDDSEFRNAFSRSYVRVREYDRRSYSRSPSRDSRGSYSRSPSRSPYMSRSRSRSHSHSYSDRSRSFSPKAKRSLRSVSLSRSLSRSRSPNSSPPPRKSRSPSRSPRRNVSQSRSPSVRSERRGSVNSGESN* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0281 298 MobiDBLite consensus disorder prediction 88 104 - -
Lan2g0281 298 MobiDBLite consensus disorder prediction 187 298 - -
Lan2g0281 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Lan2g0281 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Lan2g0281 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 175 IPR000504 GO:0003723
Lan2g0281 298 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 278 - -
Lan2g0281 298 Gene3D - 1 109 IPR012677 -
Lan2g0281 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Lan2g0281 298 SUPERFAMILY RNA-binding domain, RBD 5 176 IPR035979 GO:0003676
Lan2g0281 298 MobiDBLite consensus disorder prediction 271 298 - -
Lan2g0281 298 MobiDBLite consensus disorder prediction 197 220 - -
Lan2g0281 298 CDD RRM1_SF2_plant_like 8 79 - -
Lan2g0281 298 SMART rrm1_1 112 183 IPR000504 GO:0003723
Lan2g0281 298 SMART rrm1_1 8 78 IPR000504 GO:0003723
Lan2g0281 298 MobiDBLite consensus disorder prediction 237 260 - -
Lan2g0281 298 Gene3D - 110 188 IPR012677 -
Lan2g0281 298 CDD RRM2_SF2_plant_like 111 186 - -
Lan2g0281 298 PANTHER PRE-MRNA-SPLICING FACTOR SF2-LIKE PROTEIN 2 278 - -
Lan2g0281 298 MobiDBLite consensus disorder prediction 221 235 - -
Lan2g0281 298 MobiDBLite consensus disorder prediction 84 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0281 Lan-Chr2 2383810 2389699 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0281 9 80 Eukaryotic Initiation Factors Gene Family AT3G11400 36.000 3.40e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0281 K12890 - gmx:100794282 316.62